Detail information of GWHGAAEX014459/evm.TU.scaffold_59.242


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG13750Beta tubulin
nrgi|695025990|ref|XP_009400266.1|0PREDICTED: tubulin beta-7 chain-like [Musa acuminata subsp. malaccensis]
Swissprottr|P18025|TBB1_MAIZE0Tubulin beta-1 chain
trEMBLtr|B9RCB7|B9RCB7_RICCO0Tubulin beta chain, putative {ECO:0000313|EMBL:EEF51188.1}
TAIRAT5G122500beta-6 tubulin

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006845108564513231+
Transcript Sequence

Network for GWHGAAEX014459

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module7

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00091.24Tubulin32117.40E-70
PF03953.16Tubulin_C2613818.60E-39
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07375TUBB Phagosome map04145
Gap junctionmap04540

Gene Ontology

GO term OntologyName
GO:0007017Biological Processmicrotubule-based process
GO:0005200Molecular Functionstructural constituent of cytoskeleton
GO:0003924Molecular FunctionGTPase activity
GO:0005525Molecular FunctionGTP binding
GO:0005874Cellular Componentmicrotubule

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms9.130
SRR2545915Juvenile tuber38.920
SRP108465SRR5643513five period of Gastrodia elata109.850
SRR5643514five period of Gastrodia elata139.930
SRR5643515five period of Gastrodia elata107.090
SRR5643524five period of Gastrodia elata95.340
SRR5643525five period of Gastrodia elata193.130
SRR5643528five period of Gastrodia elata155.520
SRR5643658five period of Gastrodia elata305.610
SRR5643659five period of Gastrodia elata207.280
SRR5643660five period of Gastrodia elata173.630
SRR5643661five period of Gastrodia elata162.150
SRR5643662five period of Gastrodia elata162.680
SRR5643663five period of Gastrodia elata243.700
SRR5643664five period of Gastrodia elata143.980
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1206.490
SRR6049655Rhizomagastrodiae_C368-T10_good_1156.340
SRR6049656Rhizomagastrodiae_C368-T07_good_1201.350
SRR6049657Rhizomagastrodiae_C368-T07_good_1149.160
SRR6049658Rhizomagastrodiae_C368-T04_good_1106.170
SRR6049659Rhizomagastrodiae_C368-T04_good_156.280
SRR6049660Rhizomagastrodiae_C368-T01_good_1108.640
SRR6049661Rhizomagastrodiae_C368-T04_good_1180.350
SRR6049662Rhizomagastrodiae_C368-T01_good_1252.530
SRR6049663Rhizomagastrodiae_C368-T01_good_1136.230
SRR6049664Rhizomagastrodiae_C368-T10_good_1243.720
SRR6049665Rhizomagastrodiae_C368-T10_good_1243.720
SRP279888GastroGastrodia elata tuber 173.24
JuvenJuvenile tuber451.02
Mother_GastroMother tuber of Gastrodia elata 56.22
Mother_JuvenMother tuber of Juvenile 137.60