Detail information of GWHGAAEX014460/evm.TU.scaffold_59.243
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-89 | FOG: PPR repeat |
| nr | gi|743876083|ref|XP_010907493.1| | 2.21E-170 | PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Elaeis guineensis] |
| Swissprot | tr|Q9SN39|PP320_ARATH | 7.00E-90 | Pentatricopeptide repeat-containing protein DOT4, chloroplastic {ECO:0000305} (Precursor) |
| trEMBL | tr|M0U6S7|M0U6S7_MUSAM | 6.00E-126 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP06160_001} |
| TAIR | AT4G18750 | 2.00E-89 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000068 | 4514475 | 4516202 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014460
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 85 | 112 | 0.76 |
| PF01535.19 | PPR | 114 | 144 | 8.20E-05 |
| PF01535.19 | PPR | 187 | 210 | 0.038 |
| PF01535.19 | PPR | 216 | 245 | 3.90E-05 |
| PF01535.19 | PPR | 319 | 347 | 0.00035 |
| PF01535.19 | PPR | 353 | 380 | 0.22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.630 |
| SRR2545915 | Juvenile tuber | 0.610 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.670 |
| SRR5643514 | five period of Gastrodia elata | 1.280 | |
| SRR5643515 | five period of Gastrodia elata | 1.260 | |
| SRR5643524 | five period of Gastrodia elata | 1.510 | |
| SRR5643525 | five period of Gastrodia elata | 0.990 | |
| SRR5643528 | five period of Gastrodia elata | 0.380 | |
| SRR5643658 | five period of Gastrodia elata | 0.390 | |
| SRR5643659 | five period of Gastrodia elata | 0.880 | |
| SRR5643660 | five period of Gastrodia elata | 1.240 | |
| SRR5643661 | five period of Gastrodia elata | 1.390 | |
| SRR5643662 | five period of Gastrodia elata | 2.070 | |
| SRR5643663 | five period of Gastrodia elata | 1.520 | |
| SRR5643664 | five period of Gastrodia elata | 1.270 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.110 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.500 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.580 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.930 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.010 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.050 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.180 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.200 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.740 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.690 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.200 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.200 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.01 |
| Juven | Juvenile tuber | 1.17 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.21 | |
| Mother_Juven | Mother tuber of Juvenile | 0.69 |