Detail information of GWHGAAEX014461/evm.TU.scaffold_59.244


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428224287|ref|YP_007108384.1|6.00E-10WD40 repeat, subgroup [Geitlerinema sp. PCC 7407]
KOGKOG20550WD40 repeat protein
nrgi|743763631|ref|XP_010912007.1|0PREDICTED: U3 small nucleolar RNA-associated protein 18 homolog [Elaeis guineensis]
Swissprottr|Q9FMU5|UTP18_ARATH0U3 small nucleolar RNA-associated protein 18 homolog
trEMBLtr|W9QCQ7|W9QCQ7_9ROSA0U3 small nucleolar RNA-associated protein 18-like protein {ECO:0000313|EMBL:EXB26574.1}
TAIRAT5G140500Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006845807384594478+
Transcript Sequence

Network for GWHGAAEX014461

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.31WD402432690.13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14553UTP18 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms34.440
SRR2545915Juvenile tuber20.820
SRP108465SRR5643513five period of Gastrodia elata22.030
SRR5643514five period of Gastrodia elata23.300
SRR5643515five period of Gastrodia elata21.820
SRR5643524five period of Gastrodia elata20.840
SRR5643525five period of Gastrodia elata19.270
SRR5643528five period of Gastrodia elata23.760
SRR5643658five period of Gastrodia elata22.020
SRR5643659five period of Gastrodia elata29.830
SRR5643660five period of Gastrodia elata32.510
SRR5643661five period of Gastrodia elata27.930
SRR5643662five period of Gastrodia elata31.620
SRR5643663five period of Gastrodia elata28.660
SRR5643664five period of Gastrodia elata30.350
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_124.970
SRR6049655Rhizomagastrodiae_C368-T10_good_121.130
SRR6049656Rhizomagastrodiae_C368-T07_good_126.900
SRR6049657Rhizomagastrodiae_C368-T07_good_128.850
SRR6049658Rhizomagastrodiae_C368-T04_good_122.070
SRR6049659Rhizomagastrodiae_C368-T04_good_122.680
SRR6049660Rhizomagastrodiae_C368-T01_good_129.140
SRR6049661Rhizomagastrodiae_C368-T04_good_123.980
SRR6049662Rhizomagastrodiae_C368-T01_good_129.400
SRR6049663Rhizomagastrodiae_C368-T01_good_126.740
SRR6049664Rhizomagastrodiae_C368-T10_good_127.660
SRR6049665Rhizomagastrodiae_C368-T10_good_127.660
SRP279888GastroGastrodia elata tuber 21.38
JuvenJuvenile tuber27.81
Mother_GastroMother tuber of Gastrodia elata 19.38
Mother_JuvenMother tuber of Juvenile 20.15