Gene detail

Detail information of GWHGAAEX014466/evm.TU.scaffold_59.249

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695047304\|ref\|XP_009411527.1\|	0	PREDICTED: transcription factor GLABRA 3-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9FN69\|GL3_ARATH	1.00E-139	Transcription factor GLABRA 3
trEMBL	tr\|A0A061GCJ1\|A0A061GCJ1_THECC	1.00E-174	Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1 {ECO:0000313\|EMBL:EOY24749.1}
TAIR	AT1G63650	3.00E-137	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000068	4744964	4752686	-

Transcript Sequence
>GWHTAAEX014466 AGGGTAAAATGAGAGTACATAGATTTTTTTCAGTTCGAAATTGTCAGGTTTTTCGCGCTATATAAATCCAGAAGGTCGCTCTTCTTTCCACCAATTGTCTCGATATTGCTTTTTAATGCCAGCGCAAACTTTTCAGCAACAGGAATGGGGAAGAAGAAGCGTCATCGATTCGACTTTCACATAGAAAATATATGGAGAGCCAAGAGGAGGCTCTGGGAAAGCAATTCAGGAAGCAGCTTGCTGCCTGTGTTAGGAGCCTACAATGGAGTTATGCCATCTTTTGGTCTCTATCAACCAGTCAGGAAGGGATGCTAGACTGGAATGATGGATTCTATAATGGTGACATAAAAACTCGGAAGACCACACAACTGACTGATTGTAAAGAAGATCAAATGGGTCTGCAGAGGAGTGAACACTTGCGAGAGCTATACAAGTCTCTTTCCACTGTTGAGAGCAATGAGCAGAATAGAAGGCCTTCTGCTTCATTATCTCCTGAAGATTTGACAGATACAGAGTGGTACTATATGATCTGCATGTCCTTCACTTTTCCTTTGGGACATGACTTGCCAGGAAAAGTGTATGAACTAAATGAACCCATCTGGTTGAGCAATGCACAATTTGCCGAAAAACGAAGCTTCTCGCGCTGCCTTTTGGCAAAGAGTGCTTGTATTCAGACCGTTGTAGGCTTTCCATTCATGGATGGAGTGCTGGAGCTTGGAACATGTGAACTTGTTTTGGAAGATCCTGGCTTTGTGCAAACCATAAGAAGCTCTTTCTGGGATTTCCAAGACCCAGTTTCCTCAGAGCATTCCACATCAAGTTCCCCCTTAGCTGGAAAAGAGGATGAAAATATGTGCACAATTTTGGATCATGAAGTGGACGAAGCAATACTGTTGGAAAATCATCTCTTAGCCGTCCAGAGTGATTCCCATGAATTTCCGTTTGATGTCAACTCTTATGCTCCCAGCAAACAGACTGAGCTAATGCACAGCAGTGCAACTGAGCTTCATTCAAGTATCTGCGACGAATTTGTTGGCGCTCCCGAGGGCATGTCCAATGAGTTGAGCAATGGATTTCATGGTTCTTTTAAGTGCTCGGACGAATGTGCACCATGGTCCTTTGCCCAAAACATCCTTCCTTCTCCAAGAGGCGAAAGAGTGAAGGGAAACATGCTTGAGCATCACCAAGAGAGCAATCAAGCAAATTTTAGTTCATTTGGTGCTGACGGTGATGGCTCTCATTATGCTTCCACTCTTTCTACTATTCTCGGGAGCTCTAAGCAGCAAATAACATCGCCAGCCATTCCTTTTGAGAATTGTTCTGATAAGTCTAGTTTTAAGACTTGGAAGAGAGGCTCGAGGAATTTGAAAATTTTCAGCAGAATGCCTCAGAGAATGTTGAAGAAACTCTTAATTGATTGCAAGTGGATGAATGGTGATCAGGTGTTGAAGCCTCGAGAGGAGGTTTTTGCAAGGAATAAAACTTGGAAATCAGAAGCAGAAGATACTAATGCAAACCATGTCTTGTCAGAGAGGAGGAGGAGGGAGAAACTGAATGAGAAGTTCCTTGTTCTCAGATCACTTGTTCCTTCAATAAGCAAGGTTGACAAAACATCCATTCTTGCCGACACGATTGAATACATCAAAGAGCTTGAGAGAAGAGTTGAAGAGCTTGAATCCTATGGAGAAGAGGCAGGCCTTGACACGAAACCAACAAGGAGACATCCGGATATCGCCGAAAGGACATCCGACAATTGTGGAGAGAACAACGGACTAAAGCCTTGGTCGTCGAGCAAGAGAAAAGCTTGCGAGATCGACGAGACGGACAACGATCATCAACGCTCGTTGTCAAACAGCGGCTTAGTTGATATCAATATCACTGTGATCGAGAAAGCGGTTCTCGTCGAGATGCAGTGCCCGTGGAGAGATTCGTTGCTGCTCGACATTGTCGAAACCATGAGCAAGCTTCATCTAGATGCTCAATCCGTGCAATCGTCCTCTGTCGACGGCACCCTTGCCATCACATTACGATCCAAGTGTATGGCTGAAATTGTGGCATCTCCTGGAATGATCAAGAGAGCATTGCAGAGAGTTGTCAGCAGATGCTGAGCTTGTTTTTTTTTTTTCAAATAAAAGTGATGGGATTTAAATTCATGATATTAAGAGTAAAATATATCTTTATATTAAAAGTCATTTGTTGTATATAGAAAATAGAATTATAAGTAAGAAAGCTGATGAAAATTTGATCTGATTTCTTCATTTGCTTGCGTGCATGTAATTACTTCACGTAAAATGGCAT

Network for GWHGAAEX014466

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14215.5	bHLH-MYC_N	13	195	5.00E-50
PF00010.25	HLH	442	488	2.40E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	Molecular Function	protein dimerization activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	110.890
SRP064423	SRR2545915	Juvenile tuber	84.980
SRP108465	SRR5643513	five period of Gastrodia elata	39.600
	SRR5643514	five period of Gastrodia elata	21.890
	SRR5643515	five period of Gastrodia elata	49.420
	SRR5643524	five period of Gastrodia elata	46.010
	SRR5643525	five period of Gastrodia elata	36.420
	SRR5643528	five period of Gastrodia elata	116.650
	SRR5643658	five period of Gastrodia elata	48.150
	SRR5643659	five period of Gastrodia elata	42.450
	SRR5643660	five period of Gastrodia elata	44.760
	SRR5643661	five period of Gastrodia elata	46.460
	SRR5643662	five period of Gastrodia elata	63.910
	SRR5643663	five period of Gastrodia elata	45.620
	SRR5643664	five period of Gastrodia elata	42.030
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	28.820
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	21.340
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	28.940
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	31.050
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	32.440
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	30.300
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.420
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	49.720
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	22.560
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	25.640
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	19.200
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	19.200
SRP279888	Gastro	Gastrodia elata tuber	50.52
	Juven	Juvenile tuber	47.31
	Mother_Gastro	Mother tuber of Gastrodia elata	159.13
	Mother_Juven	Mother tuber of Juvenile	210.87