Detail information of GWHGAAEX014468/evm.TU.scaffold_59.251
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743764181|ref|XP_010912296.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g18020 [Elaeis guineensis] |
| Swissprot | tr|Q9LSK8|PP240_ARATH | 0 | Pentatricopeptide repeat-containing protein At3g18020 |
| trEMBL | tr|M0S5Z9|M0S5Z9_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P07580_001} |
| TAIR | AT3G18020 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000068 | 4781977 | 4802751 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014468
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 189 | 236 | 1.80E-16 |
| PF01535.19 | PPR | 271 | 293 | 1.1 |
| PF01535.19 | PPR | 303 | 332 | 0.014 |
| PF01535.19 | PPR | 337 | 366 | 0.16 |
| PF12854.6 | PPR_1 | 436 | 467 | 1.10E-12 |
| PF13041.5 | PPR_2 | 511 | 560 | 1.70E-13 |
| PF01535.19 | PPR | 585 | 614 | 0.016 |
| PF13041.5 | PPR_2 | 616 | 659 | 1.30E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.510 |
| SRR2545915 | Juvenile tuber | 6.230 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.600 |
| SRR5643514 | five period of Gastrodia elata | 4.780 | |
| SRR5643515 | five period of Gastrodia elata | 6.730 | |
| SRR5643524 | five period of Gastrodia elata | 5.030 | |
| SRR5643525 | five period of Gastrodia elata | 5.410 | |
| SRR5643528 | five period of Gastrodia elata | 3.280 | |
| SRR5643658 | five period of Gastrodia elata | 2.490 | |
| SRR5643659 | five period of Gastrodia elata | 7.250 | |
| SRR5643660 | five period of Gastrodia elata | 9.180 | |
| SRR5643661 | five period of Gastrodia elata | 7.400 | |
| SRR5643662 | five period of Gastrodia elata | 8.230 | |
| SRR5643663 | five period of Gastrodia elata | 7.860 | |
| SRR5643664 | five period of Gastrodia elata | 9.820 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.760 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.450 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.300 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.460 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.630 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.400 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.730 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.090 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.810 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.430 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.880 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.880 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.42 |
| Juven | Juvenile tuber | 10.94 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.95 | |
| Mother_Juven | Mother tuber of Juvenile | 10.88 |