Detail information of GWHGAAEX014470/evm.TU.scaffold_59.253
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|337745718|ref|YP_004639880.1| | 3.00E-40 | beta/alpha-amylase [Paenibacillus mucilaginosus KNP414] |
| nr | gi|719998308|ref|XP_010255371.1| | 0 | PREDICTED: beta-amylase 2, chloroplastic-like isoform X1 [Nelumbo nucifera] |
| Swissprot | tr|O80831|BAM7_ARATH | 0 | Beta-amylase 7 |
| trEMBL | tr|F6I626|F6I626_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB62422.1} |
| TAIR | AT2G45880 | 0 | beta-amylase 7 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000068 | 4817043 | 4837291 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014470
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05687.12 | BES1_N | 30 | 116 | 5.00E-37 |
| PF01373.16 | Glyco_hydro_14 | 202 | 619 | 8.80E-99 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | BES1 |
| Carbohydrate-Active enzymes Family | GH14 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01177 | E3.2.1.2 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Starch and sucrose metabolism | map00500 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000272 | Biological Process | polysaccharide catabolic process |
| GO:0016161 | Molecular Function | beta-amylase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.970 |
| SRR2545915 | Juvenile tuber | 12.620 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.650 |
| SRR5643514 | five period of Gastrodia elata | 18.010 | |
| SRR5643515 | five period of Gastrodia elata | 17.630 | |
| SRR5643524 | five period of Gastrodia elata | 19.730 | |
| SRR5643525 | five period of Gastrodia elata | 17.270 | |
| SRR5643528 | five period of Gastrodia elata | 14.050 | |
| SRR5643658 | five period of Gastrodia elata | 16.450 | |
| SRR5643659 | five period of Gastrodia elata | 18.630 | |
| SRR5643660 | five period of Gastrodia elata | 19.490 | |
| SRR5643661 | five period of Gastrodia elata | 16.820 | |
| SRR5643662 | five period of Gastrodia elata | 21.050 | |
| SRR5643663 | five period of Gastrodia elata | 18.860 | |
| SRR5643664 | five period of Gastrodia elata | 19.200 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 17.420 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.870 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.750 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.570 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.810 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 20.960 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 19.850 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.270 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.310 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 19.410 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 15.790 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 15.790 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 23.76 |
| Juven | Juvenile tuber | 26.37 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 20.75 | |
| Mother_Juven | Mother tuber of Juvenile | 25.02 |