Detail information of GWHGAAEX014473/evm.TU.scaffold_59.256


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|292493490|ref|YP_003528929.1|7.00E-14Kelch repeat-containing protein [Nitrosococcus halophilus Nc 4]
KOGKOG10722.00E-68FOG: Kelch repeat
nrgi|743852810|ref|XP_010940480.1|2.50E-107PREDICTED: F-box/kelch-repeat protein SKIP4 [Elaeis guineensis]
Swissprottr|Q9M2C9|SKIP4_ARATH6.00E-69F-box/kelch-repeat protein SKIP4
trEMBLtr|M0SQP2|M0SQP2_MUSAM1.00E-101Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P20790_001}
TAIRAT3G613502.00E-68SKP1 interacting partner 4

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006848577124873708+
Transcript Sequence

Network for GWHGAAEX014473

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.32F-box22590.00021
PF01344.24Kelch_11161591.60E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms18.480
SRR2545915Juvenile tuber14.820
SRP108465SRR5643513five period of Gastrodia elata15.690
SRR5643514five period of Gastrodia elata10.430
SRR5643515five period of Gastrodia elata12.380
SRR5643524five period of Gastrodia elata10.090
SRR5643525five period of Gastrodia elata18.140
SRR5643528five period of Gastrodia elata18.730
SRR5643658five period of Gastrodia elata14.450
SRR5643659five period of Gastrodia elata20.930
SRR5643660five period of Gastrodia elata23.930
SRR5643661five period of Gastrodia elata25.980
SRR5643662five period of Gastrodia elata20.840
SRR5643663five period of Gastrodia elata24.080
SRR5643664five period of Gastrodia elata22.030
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_122.260
SRR6049655Rhizomagastrodiae_C368-T10_good_17.950
SRR6049656Rhizomagastrodiae_C368-T07_good_115.780
SRR6049657Rhizomagastrodiae_C368-T07_good_127.400
SRR6049658Rhizomagastrodiae_C368-T04_good_126.010
SRR6049659Rhizomagastrodiae_C368-T04_good_125.940
SRR6049660Rhizomagastrodiae_C368-T01_good_120.950
SRR6049661Rhizomagastrodiae_C368-T04_good_122.130
SRR6049662Rhizomagastrodiae_C368-T01_good_116.240
SRR6049663Rhizomagastrodiae_C368-T01_good_116.920
SRR6049664Rhizomagastrodiae_C368-T10_good_114.780
SRR6049665Rhizomagastrodiae_C368-T10_good_114.780
SRP279888GastroGastrodia elata tuber 24.13
JuvenJuvenile tuber29.22
Mother_GastroMother tuber of Gastrodia elata 20.63
Mother_JuvenMother tuber of Juvenile 18.36