Detail information of GWHGAAEX014478/evm.TU.scaffold_59.261


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG32299.00E-116Vacuolar sorting protein VPS24
nrgi|743776415|ref|XP_010918614.1|6.72E-131PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Elaeis guineensis]
Swissprottr|Q9FFB3|VP241_ARATH3.00E-116Vacuolar protein sorting-associated protein 24 homolog 1
trEMBLtr|W1PXX3|W1PXX3_AMBTC5.00E-123Uncharacterized protein {ECO:0000313|EMBL:ERN12874.1}
TAIRAT5G229509.00E-116SNF7 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006849113284931745-
Transcript Sequence

Network for GWHGAAEX014478

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03357.20Snf7211881.60E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12193VPS24, CHMP3 Endocytosis map04144
Necroptosismap04217

Gene Ontology

GO term OntologyName
GO:0007034Biological Processvacuolar transport

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms94.660
SRR2545915Juvenile tuber112.490
SRP108465SRR5643513five period of Gastrodia elata116.160
SRR5643514five period of Gastrodia elata130.690
SRR5643515five period of Gastrodia elata105.250
SRR5643524five period of Gastrodia elata115.270
SRR5643525five period of Gastrodia elata143.170
SRR5643528five period of Gastrodia elata119.450
SRR5643658five period of Gastrodia elata163.630
SRR5643659five period of Gastrodia elata125.880
SRR5643660five period of Gastrodia elata146.870
SRR5643661five period of Gastrodia elata130.630
SRR5643662five period of Gastrodia elata128.640
SRR5643663five period of Gastrodia elata124.530
SRR5643664five period of Gastrodia elata161.440
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1148.250
SRR6049655Rhizomagastrodiae_C368-T10_good_187.190
SRR6049656Rhizomagastrodiae_C368-T07_good_1156.410
SRR6049657Rhizomagastrodiae_C368-T07_good_1180.470
SRR6049658Rhizomagastrodiae_C368-T04_good_1221.260
SRR6049659Rhizomagastrodiae_C368-T04_good_1285.200
SRR6049660Rhizomagastrodiae_C368-T01_good_1185.220
SRR6049661Rhizomagastrodiae_C368-T04_good_1210.860
SRR6049662Rhizomagastrodiae_C368-T01_good_1133.060
SRR6049663Rhizomagastrodiae_C368-T01_good_1171.330
SRR6049664Rhizomagastrodiae_C368-T10_good_1129.970
SRR6049665Rhizomagastrodiae_C368-T10_good_1129.970
SRP279888GastroGastrodia elata tuber 325.17
JuvenJuvenile tuber180.56
Mother_GastroMother tuber of Gastrodia elata 154.11
Mother_JuvenMother tuber of Juvenile 147.67