Gene detail

Detail information of GWHGAAEX014487/evm.TU.scaffold_59.274

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743870798\|ref\|XP_010906137.1\|	0	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105033153 [Elaeis guineensis]
trEMBL	tr\|K3XED1\|K3XED1_SETIT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si000248m}
TAIR	AT3G49400	2.00E-66	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000068	5248906	5315570	-

Transcript Sequence
>GWHTAAEX014487 ATGGATCTCCCTTCCGAATCATCGAGCAACCCTAAGTATTTCTCCGTTTTGTGCCGAGTAGTCCAGCACAGTCATGCCTCGTATTTTCATATAAAAAAAAAAAAAAAGGCGTTGAGAAGTTCGGTAAGAGCAGCGCAGTCGATCTCTCCGAGTATTCTTCGCCACGAAGAAAGAGTTCGTCTCCTGCGACGCACAACTGCCATCAACCGGGCATTTCCCCTCCTGCGACGCACAGCAGCTCGCTTTCTCTTTCGCCGCGATCTTGGCTTGCTGCGTCGTCGGGAGAGACGGAGAGGTAGGGTACTTCGAGGCGCCGCGACTTCGCGCCCGACTTGGAGATTCGACGCCGAGCCTTCCTGCCGTCGACGCCGAGCCTTGCCTGCCGTCGCCGCCGTCGCCGCCGTCGCTGCCATCCCTACCAGAAGCACGGAAGGTCGCAGTCGCCTCTCGCCGCTCGCTGAGATCGCTGCCTTCCCCGCTCGCCGAGCCTTCATTGCCTTCGCCGCTCGTGGAGCATTCGTTGCCTTCGCCGCTCGTCGAGCCTTCATTGCCTTCGCCGCTCGTGGAGCCTTCGTTGCCTTCGCCGATCCTTCATTGCCAGACGCGCGGAAGAAGTTTAAAGAAAAAAAAACTCATAAATTCGAAGAGTTAGATATTTATCTCGCACCTTTTCTTCGGTCCGATTTTTCTCCTATTCGCGGCGACTACTTGGGCCTCCACCGCCTCCTCCTCCTCGAAGAGGAATCCTTAAGCTTTCTCAGGGTGATTTTTGTTCTGCAAGATCTTCTTACCCCCTGCTTGCAACCCATCTGTTTGGCAAAAGATACTCGTCCCTATGCTCAATCAATTTCTTGGTCTCCTCCAGGGCTTGCCCTTAATTCAGGATGTTTTCTAGCTGTTTGCACTACTGATGGCCGTGTAAAACTTTATCGGGCACCATATTGTGAGTACAGTTCTGAGTGGATTGAGGCTGCTGACATCTCCGACCTTCTGTTTTGTTATTTAGTTAGTATGAATTACAACGAGCAGCTTGATCTACCTTTAGTTATTTATGGATCAGAAGCCAGTAACAGCAGACAGACTAGATGGAATCATGGGTTTGCAGGTTCTGTTTGTCGCAAGTCTGTCAGAATCAGAAAGAGAAAGGAGCCAAGTTGTAGCATTGAGGGAATGCATGCTGATCCTGTAGGAAAAGCAGCCCTGCATAAAACAAATCCAGAGTCTACTAAGTGGGTCGCATGCTCTGACCAGGATGAGATTGCATTGGAGGATATTGTGGGTATCCATGAGAATGGCAGTAGGAATGGTTCAGATCAGAGCTCTGACTTGCCGCTTATAACCGCAAAGCAATATGCGTTTCGTAATGCGGTCTTGTCATCCCTGGTTGTTACATGGTCATCAATACTGCAATCATGTGAAAACTTTGGTGCCATTCTTTCTGTTGGATCAAAATCTGGTGCTATTTCTTTTTGGAGGATTTGTGAGCCCCAATACTATACTATAAAGCATGGAAACATTCCTGTGAATCCAATGCTCGTTGGACATATTCAGGCTCATGATTCATGGATCACTGCAATTTGTTTTGGTACTTTTGCTACCAGTTCTTCAGAGTCTCAATTGATCTTGGCAACTGGTTGTTCTGATGGAAGTGTGAAGATTTGGTCTGGAAATGTTGAAAAATTGATGTTGGCGACAAAAGTAAGGAATGATTGTTTTTTATTATTAGCAGAGGTGACAGCTGCTACATTTGTTCCTGTTTCAACAATTTCTTTGATCATTTCTGCTAAATCATCAAAACATGCTCTTTTAGCTATAGGAAGAGGATCTGGAAAGTTGGAAGCATGGATCTATGATATATTAAAAAAAAAACTTTGTTTTGTTGCCGACCATAGCATTCACGAACAAGTGGTGACAGGACTGGCTTGGACTTTTGATGGATGTTATTTGTACAGCTGCAGTCAGGATAACTCAATTCGTAGCTGGATGTTTCATGGGGATTCTCTAATTGAAATGCCGATATCTTCAAAATTTTCTGCTTCCGATAACTCTCCAAATCTTTCTCAGATTTCTGATCTATGTTTTGGGCTTGCTGTTTCTCCCGGAGAACTGATGCTTGCCGTGGTTCGCAGCTTGGACGCCAATCTTCAGCATCAGATGTATGAGAAAAGATCTCAGAAAGCAGTGATTGAGTTCTTTGGAATTGGGCCTCAATCCATGGAGGCTCTAAATTGCAGCTCGTTTGATCCTGAACTGGCCAGTTGGGAAACCACCATATTCCGGTTTTTAAAATGCTTTGAAGATGCTGACAAGCCCATAGTGATTTGGGACGCGGTAGCCCTGCTACGAGATCTCAGGAAAGATTTTCCTGACTTGGTCGAGACTATACTAACTAAATGGATATCCAGCTGGTTCTCAGAACCCAAAAAAATATCGTTCCGCGGCAGAGATAAACTCATGATGATCGGTTCCCGTAAAATGCACCTGTTAAACATAATCTGCAGAAGAGTGATGCTTGCTGAGGTGGATATGGGCTCAATCAGGAAGGATGATCAGCTTAATAACTGGAATGAATTGCTCGTCGAAAGTGAAAGAGAGCTGCAAGAACGAGTCGTTGCTTTCTCTTTCCGAGCTGCTGTAAGCCACACAGGAAGCTCTCACTGTTGGTCCCCCGTCGGGGTGGCGCAGATGCGATATTGGGCCGCCATTAATGACCAAACGATACATGCCCAGCTCAAGCTCCTTGAATCTGAAGTCATTGAGGTCATCAGGGACAGGAATGATGAAGAAAGCTGCAGCTTTTGCTCAGCTGCAGTGCCCTTTGAGTCTCCGGAGGCAGCTTGGTGCGGCTCCATGGAAAGAAGTCACAGGCTGACAAGATGTGCAGTTTCGATGAGGCTTTGCTCTGTGACAGAGCCGCTCTGGTACTGCATTTGCTGCAGGAGACGGGCGGAGAATCTGCTCCCCCGTTCATTCTTTGCTCTGGACAAATCCCCTATTGTTCTTTCCTCGGCCCAAAAATCGCCCTTTTTTTTGGCGGGAGAACGGTCTCAGCCGTTGTGCCCCTTTTGTGGAATTCTGTTGCAGAGATCACTGCCGGATTTCTTGATGTCTGCATCCCCAGTGTAAACTTGGGAGAGAGAAAATTAGGTACTTATTTTGGGATTAGACATTCAAAGTTAGTTTATTTATATACAGAGAAATGTTATTTAGACTTGTTGATGTGATATTTATAA

Network for GWHGAAEX014487

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12657.6	TFIIIC_delta	275	336	7.70E-10
PF00400.31	WD40	513	555	0.00027
PF00400.31	WD40	633	661	0.0024
PF12660.6	zf-TFIIIC	928	983	2.10E-05

Protein Sequence

>GWHPAAEX014487
MDLPSESSSNPKYFSVLCRVVQHSHASYFHIKKKKKALRSSVRAAQSISPSILRHEERVRLLRRTTAINRAFPLLRRTAARFLFRRDLGLLRRRERRRGRVLRGAATSRPTWRFDAEPSCRRRRALPAVAAVAAVAAIPTRSTEGRSRLSPLAEIAAFPARRAFIAFAARGAFVAFAARRAFIAFAARGAFVAFADPSLPDARKKFKEKKTHKFEELDIYLAPFLRSDFSPIRGDYLGLHRLLLLEEESLSFLRVIFVLQDLLTPCLQPICLAKDTRPYAQSISWSPPGLALNSGCFLAVCTTDGRVKLYRAPYCEYSSEWIEAADISDLLFCYLVSMNYNEQLDLPLVIYGSEASNSRQTRWNHGFAGSVCRKSVRIRKRKEPSCSIEGMHADPVGKAALHKTNPESTKWVACSDQDEIALEDIVGIHENGSRNGSDQSSDLPLITAKQYAFRNAVLSSLVVTWSSILQSCENFGAILSVGSKSGAISFWRICEPQYYTIKHGNIPVNPMLVGHIQAHDSWITAICFGTFATSSSESQLILATGCSDGSVKIWSGNVEKLMLATKVRNDCFLLLAEVTAATFVPVSTISLIISAKSSKHALLAIGRGSGKLEAWIYDILKKKLCFVADHSIHEQVVTGLAWTFDGCYLYSCSQDNSIRSWMFHGDSLIEMPISSKFSASDNSPNLSQISDLCFGLAVSPGELMLAVVRSLDANLQHQMYEKRSQKAVIEFFGIGPQSMEALNCSSFDPELASWETTIFRFLKCFEDADKPIVIWDAVALLRDLRKDFPDLVETILTKWISSWFSEPKKISFRGRDKLMMIGSRKMHLLNIICRRVMLAEVDMGSIRKDDQLNNWNELLVESERELQERVVAFSFRAAVSHTGSSHCWSPVGVAQMRYWAAINDQTIHAQLKLLESEVIEVIRDRNDEESCSFCSAAVPFESPEAAWCGSMERSHRLTRCAVSMRLCSVTEPLWYCICCRRRAENLLPRSFFALDKSPIVLSSAQKSPFFLAGERSQPLCPFCGILLQRSLPDFLMSASPV

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	13.840
SRP064423	SRR2545915	Juvenile tuber	10.630
SRP108465	SRR5643513	five period of Gastrodia elata	18.470
	SRR5643514	five period of Gastrodia elata	15.840
	SRR5643515	five period of Gastrodia elata	15.440
	SRR5643524	five period of Gastrodia elata	16.160
	SRR5643525	five period of Gastrodia elata	15.260
	SRR5643528	five period of Gastrodia elata	14.930
	SRR5643658	five period of Gastrodia elata	17.040
	SRR5643659	five period of Gastrodia elata	19.340
	SRR5643660	five period of Gastrodia elata	23.670
	SRR5643661	five period of Gastrodia elata	20.280
	SRR5643662	five period of Gastrodia elata	20.780
	SRR5643663	five period of Gastrodia elata	21.080
	SRR5643664	five period of Gastrodia elata	23.240
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	19.940
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	16.010
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.790
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	20.120
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	10.550
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	10.960
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.480
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.360
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.460
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.700
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.630
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.630
SRP279888	Gastro	Gastrodia elata tuber	19.50
	Juven	Juvenile tuber	38.67
	Mother_Gastro	Mother tuber of Gastrodia elata	16.57
	Mother_Juven	Mother tuber of Juvenile	33.36