Gene detail

Detail information of GWHGAAEX014494/evm.TU.scaffold_59.281

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0048	5.00E-71	Transcription factor, Myb superfamily
nr	gi\|694995772\|ref\|XP_009390359.1\|	4.39E-77	PREDICTED: transcription factor MYB34-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9SJL7\|RAX2_ARATH	4.00E-71	Transcription factor RAX2
trEMBL	tr\|M0RWM2\|M0RWM2_MUSAM	7.00E-76	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P03140_001}
TAIR	AT5G57620	5.00E-71	myb domain protein 36

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000068	5433196	5437042	-

Transcript Sequence
>GWHTAAEX014494 AATAAAAAAAAAATATAATATACCAAACAATGATTGATTACACGTAGAATTGTGATAATACGGTGTTTTTAGTATGTAAATATGGCAAAGTACTTTAAGGGGAATGGAAGGGAAGGGAAGGGACGTCTTGGCAATAATAGGGACGAGGTCAAGCAGCTGTTCATCGCAAACATCCTCTGACTTGCTGTTTCCACGTATATTTTATTTCTGCGCCCATCAGCCAGCAAGCATATATCCTCCGCGCGTGCATTGTTCCTCCTCCCAAGTAGTGTCTTAGAACTTGCAAGGGAATTTTATGGGGAAGGCTCCTTGCTGCGATAAGGCTAATGTGAAAAGGGGGCCTTGGTCGCCTGACGAAGATCATAAGCTCAAGGAATTCATTCAGAAGCATGGCACTGGGGGCAATTGGATTGCTCTCCCACACAAGGCTGGGTTGAAGAGGTGTGGGAAGAGCTGCAGGTTGAGATGGTTAAATTATCTGAGGCCAAATATAAACCATGGAGAGTTCTCTGAAGATGAGGACAGAGTCATCTTCTCCCTCTTTGCCACTATTGGCAGCAGGTGGTCGATCATAGCATCCCAGCTGCCAGGCCGGACCGACAACGACATAAAGAACCACTGGAACACGAAGCTGAAGAAGAGACTCCTCAGCAGCTGCTCTCTTTCCCGTAAGAAGACGCCATTATTCCAACAACAAAGCCTAGAAAAGCAGCAGCAGCAGCAATCCTTCTCACTCTCACCTTTGCAGCTCAACTATCACACCACCGCCTCTTCTCCTTATCAAAAGCCATTAATGCCCCCTTGTTTTTCCCCACAAGTCGAAGCTTCGATACCAATCTCTTCGGAGTCCTTCAGTCCCCCATCTTCTTCTTCCTCCCTCATGCAGAATCCTTACCGTCCAGCAGACAAGGACAATGGAAATCATTCTAACATATTTTTGTATAATGGGCACCGGCACAGCTGCTGCACACAACAAAACAGCCACAACTTGTGCACTGGAGACTATTCGATACATGGGAATGTCTACGGTAGCTTACAGGAGTTTGGAGGGGGTGGATTTCAAAGCGCAGAAATGGGAGAGTGCAGCTCAGTTTATAGTTGTGAGGGGAATAAGCAGCAGCTGCTGCTGAATAATAACAGTTTGATGCAGCTGAGATATAGTTTGCAGGATCAAACCGTTGTGAAGACAGTAATATTATATGAGCTTAGCTCATAATTCTTGGGTATGTTTTGATCAGGTTATTTAGTCTGTAGTTATTTGTGCTTGAGCTTATTGTTGTCAACACAGACATAAACAGATAAAAATTATGTCCAACAGATTTATATAAAGTTACAGCAAAAGAGCAGCCCTTGTGTTTAAGATGGATAACTCTCGAGAATATTGAGAGTACGAGGAAGCACGAAATGTTCTTAGTCCCACATTATGAATTGTAGAGGATTTTAGTGTTGAAATAATAACAATTGGCTGACACTTGCACGTTAAAAACGAATTTGACCACTAATGTATCTACTCATATTTTTACTCCTCTTTCTTTCTAGTAATATATTTTAATCACTTTCTTCAACTAATAAATAAAAAATATATATTTTAGACAATATTGAATATTCATCAAACTACATAAATTCAGCGTTTGTGCTTGTTTGTTTTAATTCTTATATATGCTTCATTTTTCTTTCATGGGAG

Network for GWHGAAEX014494

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	14	62	1.80E-15
PF00249.30	Myb_DNA-binding	69	111	3.70E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	17.300
SRP064423	SRR2545915	Juvenile tuber	33.860
SRP108465	SRR5643513	five period of Gastrodia elata	28.020
	SRR5643514	five period of Gastrodia elata	60.130
	SRR5643515	five period of Gastrodia elata	38.320
	SRR5643524	five period of Gastrodia elata	66.260
	SRR5643525	five period of Gastrodia elata	37.860
	SRR5643528	five period of Gastrodia elata	28.560
	SRR5643658	five period of Gastrodia elata	26.240
	SRR5643659	five period of Gastrodia elata	18.970
	SRR5643660	five period of Gastrodia elata	22.610
	SRR5643661	five period of Gastrodia elata	26.340
	SRR5643662	five period of Gastrodia elata	20.370
	SRR5643663	five period of Gastrodia elata	22.240
	SRR5643664	five period of Gastrodia elata	10.220
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.270
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	16.570
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.210
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.800
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.000
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	10.470
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.010
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.580
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	27.300
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.340
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.930
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.930
SRP279888	Gastro	Gastrodia elata tuber	12.66
	Juven	Juvenile tuber	12.44
	Mother_Gastro	Mother tuber of Gastrodia elata	434.88
	Mother_Juven	Mother tuber of Juvenile	69.54