Detail information of GWHGAAEX014495/evm.TU.scaffold_6.2
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-69 | FOG: PPR repeat |
| nr | gi|672181427|ref|XP_008810930.1| | 4.23E-123 | PREDICTED: pentatricopeptide repeat-containing protein At1g43980, mitochondrial [Phoenix dactylifera] |
| Swissprot | tr|Q9SIT7|PP151_ARATH | 6.00E-70 | Pentatricopeptide repeat-containing protein At2g13600 |
| trEMBL | tr|W4ZUB4|W4ZUB4_WHEAT | 2.00E-94 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_1AL_F90143782.1} |
| trEMBL | tr|W4ZUB4|W4ZUB4_WHEAT | 1.00E-11 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_1AL_F90143782.1} |
| TAIR | AT2G13600 | 2.00E-69 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000003 | 131868 | 134667 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014495
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 11 | 29 | 0.099 |
| PF01535.19 | PPR | 80 | 103 | 0.2 |
| PF01535.19 | PPR | 108 | 138 | 2.80E-05 |
| PF01535.19 | PPR | 248 | 276 | 0.1 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.110 |
| SRR2545915 | Juvenile tuber | 2.820 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.250 |
| SRR5643514 | five period of Gastrodia elata | 3.690 | |
| SRR5643515 | five period of Gastrodia elata | 2.980 | |
| SRR5643524 | five period of Gastrodia elata | 3.660 | |
| SRR5643525 | five period of Gastrodia elata | 2.570 | |
| SRR5643528 | five period of Gastrodia elata | 1.620 | |
| SRR5643658 | five period of Gastrodia elata | 1.790 | |
| SRR5643659 | five period of Gastrodia elata | 4.640 | |
| SRR5643660 | five period of Gastrodia elata | 5.430 | |
| SRR5643661 | five period of Gastrodia elata | 4.830 | |
| SRR5643662 | five period of Gastrodia elata | 4.520 | |
| SRR5643663 | five period of Gastrodia elata | 3.800 | |
| SRR5643664 | five period of Gastrodia elata | 3.420 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.470 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.600 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.270 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.260 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.930 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.510 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.900 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.790 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.210 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.530 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.630 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.630 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.45 |
| Juven | Juvenile tuber | 3.26 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.36 | |
| Mother_Juven | Mother tuber of Juvenile | 1.19 |