Detail information of GWHGAAEX014499/evm.TU.scaffold_6.7
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|148658115|ref|YP_001278320.1| | 2.00E-32 | NB-ARC domain-containing protein [Roseiflexus sp. RS-1] |
| KOG | KOG0288 | 0 | WD40 repeat protein TipD |
| nr | gi|743814161|ref|XP_010929950.1| | 0 | PREDICTED: protein tipD isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q8W1K8|MUT11_CHLRE | 4.00E-23 | Protein Mut11 |
| trEMBL | tr|M1B7X3|M1B7X3_SOLTU | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400039207} |
| TAIR | AT5G50230 | 0 | Transducin/WD40 repeat-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000003 | 399935 | 414839 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014499
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08614.10 | ATG16 | 42 | 168 | 3.60E-18 |
| PF00400.31 | WD40 | 215 | 254 | 0.00056 |
| PF00400.31 | WD40 | 303 | 336 | 0.0021 |
| PF00400.31 | WD40 | 447 | 468 | 0.012 |
| PF00400.31 | WD40 | 478 | 510 | 0.15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K17890 | ATG16L1 | Autophagy - animal | map04140 |
| Autophagy - yeast | map04138 | ||
| Autophagy - other | map04136 | ||
| NOD-like receptor signaling pathway | map04621 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 48.390 |
| SRR2545915 | Juvenile tuber | 47.970 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 54.270 |
| SRR5643514 | five period of Gastrodia elata | 47.000 | |
| SRR5643515 | five period of Gastrodia elata | 43.340 | |
| SRR5643524 | five period of Gastrodia elata | 44.310 | |
| SRR5643525 | five period of Gastrodia elata | 76.080 | |
| SRR5643528 | five period of Gastrodia elata | 55.980 | |
| SRR5643658 | five period of Gastrodia elata | 75.090 | |
| SRR5643659 | five period of Gastrodia elata | 70.880 | |
| SRR5643660 | five period of Gastrodia elata | 87.540 | |
| SRR5643661 | five period of Gastrodia elata | 86.740 | |
| SRR5643662 | five period of Gastrodia elata | 141.310 | |
| SRR5643663 | five period of Gastrodia elata | 116.620 | |
| SRR5643664 | five period of Gastrodia elata | 174.790 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 50.830 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 29.920 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 45.550 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 48.920 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 47.900 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 49.380 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 42.940 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 41.130 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 39.280 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 38.930 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 45.890 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 45.890 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 189.24 |
| Juven | Juvenile tuber | 102.97 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 64.18 | |
| Mother_Juven | Mother tuber of Juvenile | 69.79 |