Gene detail

Detail information of GWHGAAEX014503/evm.TU.scaffold_6.11

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|11499903\|ref\|NP_071147.1\|	2.00E-44	protein-L-isoaspartate O-methyltransferase [Archaeoglobus fulgidus DSM 4304]
KOG	KOG1661	2.00E-65	Protein-L-isoaspartate(D-aspartate) O-methyltransferase
nr	gi\|743765432\|ref\|XP_010912938.1\|	3.74E-121	PREDICTED: protein-L-isoaspartate O-methyltransferase-like isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q43209\|PIMT_WHEAT	2.00E-119	Protein-L-isoaspartate O-methyltransferase
trEMBL	tr\|W5AQ88\|W5AQ88_WHEAT	5.00E-122	Protein-L-isoaspartate O-methyltransferase {ECO:0000256\|RuleBase:RU003802}
TAIR	AT5G50240	2.00E-65	protein-l-isoaspartate methyltransferase 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000003	565299	616446	+

Transcript Sequence
>GWHTAAEX014503 ACAGTGGTGTAAAGGTAGCAGCACTTTTTATTCTAATGATAACGTTGAAATCTAATGTCCAGAGAATTCCACCCAAGCACCACTTATATGTCTAAAGCCTTCCCGAGGATTCCAGATGATGACAGTGGGCACGGATATTGTGCATAAAATGTCTAACCTGCGGCGGCGACGGCGCCTATTAATCATGCTGGCTACCACAGCCGCTGCGCCTTGTTCATTCCTCAAATTGTCGTCCAGGAATCTGAAGCGCCTCGCCTCCACCGGCTCTCCGTTTGTCTGGCGTCGCCATTTTCTACTTCTCTCATACTCGCTTTTCCCTCTTGCCGCTTCATTTTCCACGAATTTTCCTCCTTACGAGAAAGTACCCTGCACCTCTCCGGGAGCCTGCCCGTTACTTGGAATGGAGGTACTCCGTTCATCATTCAATCATTTCTTCTGCGGTTTATGGACAAGGGCATCCACTGAAAAGAACCAAGGCCTTATCGAAAGTTTGCAGCAGCATGGTGTTATAACATCAAATAAAGTGGCTGAAGTAATGGAAATTATTGAGAGGAGATTTTTTGTACCTAATGGCAGGTCACCATATATTGATAGTCCGATGCCTATTGGTTATAATGCAACGATATCAGCTCCTCATATGCATGCTACTTGTCTTGAACTATTAAAAGATCATCTTAAGACTGGCATGCGTGCTCTTGATGTAGGTTCAGGGACCGGTTACTTGACAGCCTGTTTTGCAATGATGGTTGGGCCAGAAGGCCGTGTTATTGGGATTGAGCACATTCCTGAACTAGTTTCTTTGTCAATTGAAAATTTAAATAGAAGTGTTGCAGCACCACTGATGGAGAGAGGTTCCCTCTCTATGCATGTTGCTGATGGCAGGCTTGGTTGGCCTGAATTGGCACCTTACGATGCCATTCATGTGGGTGCTGCGGCTCGTGAAATTCCTAAAGCATTATTGGACCAACTAAAGCCGGGCGGAAGAATGGTGATACCCATTGGGAACATTTTCCAAGACTTGAAAGTAATCGACCGTGATCTTGGCGGCTCCATCTCCCAACAAACTGATGCATCTGTGCGTTACGTCCCGCTGACGAGTCGATTAGCACAGCTGCAGGGATTTTGATCCAGTTTCATGTTCACAAATGACCACCCTGCTGATGTATAACAATCAAAAGCTTGTTCAAAAAACCTTAGGTTTCTCTATTATAAGCTCAGTAGTAAAGTGGGGAGTCTTGGCTGATTTATAAATATGTCTAATAAAGAGTTTCGGATTGCTGGATGGGTAACAACACAGAAAATGCTTTCTGCCTGTTATTAATTCAGCGGCTCCTATGACTTTTTATCATATGAATATGTTCTTGTTTTTTGTACATGGTTGCTTGGTTTATTGTTAATAGATTTTGAAATGATTGTAATGTGTGCAAAATCAGTGCTTGTAAATGATAATTGCTCTAAAGATTCTCTCCTGTTCACATAGTGTAATGTATTTATTATATTTAACTTTGCTTAATAGTTTCATAGTTCATACATATATTAAAGAGTAAATTCTATTCATGGTGTTTTACACAATAATGAAGGGAAAGGATTTTTT

Network for GWHGAAEX014503

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01135.18	PCMT	118	329	5.30E-82

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006464	Biological Process	cellular protein modification process
GO:0004719	Molecular Function	protein-L-isoaspartate (D-aspartate) O-methyltransferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	26.640
SRP064423	SRR2545915	Juvenile tuber	49.730
SRP108465	SRR5643513	five period of Gastrodia elata	34.610
	SRR5643514	five period of Gastrodia elata	32.100
	SRR5643515	five period of Gastrodia elata	38.690
	SRR5643524	five period of Gastrodia elata	36.670
	SRR5643525	five period of Gastrodia elata	60.240
	SRR5643528	five period of Gastrodia elata	57.540
	SRR5643658	five period of Gastrodia elata	52.820
	SRR5643659	five period of Gastrodia elata	51.240
	SRR5643660	five period of Gastrodia elata	50.960
	SRR5643661	five period of Gastrodia elata	47.370
	SRR5643662	five period of Gastrodia elata	51.680
	SRR5643663	five period of Gastrodia elata	50.880
	SRR5643664	five period of Gastrodia elata	54.360
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	42.910
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	35.310
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	38.790
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	51.780
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	45.400
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	56.330
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	41.570
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	47.060
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	32.150
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	31.790
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	32.540
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	32.540
SRP279888	Gastro	Gastrodia elata tuber	60.23
	Juven	Juvenile tuber	40.02
	Mother_Gastro	Mother tuber of Gastrodia elata	38.43
	Mother_Juven	Mother tuber of Juvenile	39.64