Detail information of GWHGAAEX014504/evm.TU.scaffold_6.13
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|434397165|ref|YP_007131169.1| | 4.00E-61 | DNA polymerase III, subunits gamma and tau [Stanieria cyanosphaera PCC 7437] |
| KOG | KOG0989 | 3.00E-100 | Replication factor C, subunit RFC4 |
| nr | gi|672144252|ref|XP_008796024.1| | 0 | PREDICTED: protein STICHEL-like 2 [Phoenix dactylifera] |
| Swissprot | tr|O64728|STI_ARATH | 2.00E-100 | Protein STICHEL |
| trEMBL | tr|J3KV18|J3KV18_ORYBR | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB0099G10010.1} |
| TAIR | AT2G02480 | 3.00E-100 | AAA-type ATPase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000003 | 738970 | 773275 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014504
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13177.5 | DNA_pol3_delta2 | 276 | 430 | 2.50E-23 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006260 | Biological Process | DNA replication |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003887 | Molecular Function | DNA-directed DNA polymerase activity |
| GO:0009360 | Cellular Component | DNA polymerase III complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 27.370 |
| SRR2545915 | Juvenile tuber | 9.890 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.410 |
| SRR5643514 | five period of Gastrodia elata | 7.600 | |
| SRR5643515 | five period of Gastrodia elata | 5.550 | |
| SRR5643524 | five period of Gastrodia elata | 7.300 | |
| SRR5643525 | five period of Gastrodia elata | 9.880 | |
| SRR5643528 | five period of Gastrodia elata | 6.830 | |
| SRR5643658 | five period of Gastrodia elata | 7.870 | |
| SRR5643659 | five period of Gastrodia elata | 2.070 | |
| SRR5643660 | five period of Gastrodia elata | 2.430 | |
| SRR5643661 | five period of Gastrodia elata | 1.820 | |
| SRR5643662 | five period of Gastrodia elata | 1.290 | |
| SRR5643663 | five period of Gastrodia elata | 1.270 | |
| SRR5643664 | five period of Gastrodia elata | 1.670 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.630 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.860 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.740 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.580 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.910 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.640 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.090 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.880 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.460 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.710 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.710 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.32 |
| Juven | Juvenile tuber | 5.11 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.64 | |
| Mother_Juven | Mother tuber of Juvenile | 6.71 |