Detail information of GWHGAAEX014508/evm.TU.scaffold_6.17


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG31085.00E-10Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit
nrgi|242035657|ref|XP_002465223.1|1.65E-52hypothetical protein SORBIDRAFT_01g034490 [Sorghum bicolor]
Swissprottr|Q9LMK5|STN1_ARATH8.00E-35CST complex subunit STN1
trEMBLtr|C5WYR1|C5WYR1_SORBI6.00E-53Putative uncharacterized protein Sb01g034490 {ECO:0000313|EMBL:EER92221.1}
TAIRHS134879235.00E-10Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000003887812888753-
Transcript Sequence

Network for GWHGAAEX014508

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01336.24tRNA_anti-codon531334.10E-08
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms4.710
SRR2545915Juvenile tuber6.340
SRP108465SRR5643513five period of Gastrodia elata6.460
SRR5643514five period of Gastrodia elata8.380
SRR5643515five period of Gastrodia elata7.950
SRR5643524five period of Gastrodia elata7.300
SRR5643525five period of Gastrodia elata7.780
SRR5643528five period of Gastrodia elata9.750
SRR5643658five period of Gastrodia elata5.850
SRR5643659five period of Gastrodia elata6.770
SRR5643660five period of Gastrodia elata6.240
SRR5643661five period of Gastrodia elata7.620
SRR5643662five period of Gastrodia elata9.110
SRR5643663five period of Gastrodia elata6.190
SRR5643664five period of Gastrodia elata7.060
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_15.170
SRR6049655Rhizomagastrodiae_C368-T10_good_19.130
SRR6049656Rhizomagastrodiae_C368-T07_good_15.030
SRR6049657Rhizomagastrodiae_C368-T07_good_14.580
SRR6049658Rhizomagastrodiae_C368-T04_good_14.590
SRR6049659Rhizomagastrodiae_C368-T04_good_14.620
SRR6049660Rhizomagastrodiae_C368-T01_good_15.100
SRR6049661Rhizomagastrodiae_C368-T04_good_13.900
SRR6049662Rhizomagastrodiae_C368-T01_good_17.560
SRR6049663Rhizomagastrodiae_C368-T01_good_15.920
SRR6049664Rhizomagastrodiae_C368-T10_good_19.060
SRR6049665Rhizomagastrodiae_C368-T10_good_19.060
SRP279888GastroGastrodia elata tuber 7.73
JuvenJuvenile tuber8.27
Mother_GastroMother tuber of Gastrodia elata 10.65
Mother_JuvenMother tuber of Juvenile 8.07