Detail information of GWHGAAEX014509/evm.TU.scaffold_6.18


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|509153654|ref|YP_008073895.1|4.00E-35exodeoxyribonuclease III [Erysipelothrix rhusiopathiae SY1027]
KOGKOG12941.00E-170Apurinic/apyrimidinic endonuclease and related enzymes
nrgi|743765366|ref|XP_010912903.1|0PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform X1 [Elaeis guineensis]
Swissprottr|Q5XF07|APEX_ARATH7.00E-176DNA-(apurinic or apyrimidinic site) lyase
trEMBLtr|C5YMZ3|C5YMZ3_SORBI0Putative uncharacterized protein Sb07g002730 {ECO:0000313|EMBL:EES13312.1}
TAIRAT3G48420_21.00E-170Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000310247491111587+
Transcript Sequence

Network for GWHGAAEX014509

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03372.22Exo_endo_phos553511.80E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006281Biological ProcessDNA repair
GO:0004518Molecular Functionnuclease activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms20.240
SRR2545915Juvenile tuber26.180
SRP108465SRR5643513five period of Gastrodia elata28.230
SRR5643514five period of Gastrodia elata33.470
SRR5643515five period of Gastrodia elata30.070
SRR5643524five period of Gastrodia elata30.540
SRR5643525five period of Gastrodia elata8.610
SRR5643528five period of Gastrodia elata5.580
SRR5643658five period of Gastrodia elata6.550
SRR5643659five period of Gastrodia elata19.060
SRR5643660five period of Gastrodia elata19.870
SRR5643661five period of Gastrodia elata21.940
SRR5643662five period of Gastrodia elata18.680
SRR5643663five period of Gastrodia elata17.960
SRR5643664five period of Gastrodia elata17.260
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_127.520
SRR6049655Rhizomagastrodiae_C368-T10_good_127.560
SRR6049656Rhizomagastrodiae_C368-T07_good_125.840
SRR6049657Rhizomagastrodiae_C368-T07_good_124.740
SRR6049658Rhizomagastrodiae_C368-T04_good_116.320
SRR6049659Rhizomagastrodiae_C368-T04_good_116.400
SRR6049660Rhizomagastrodiae_C368-T01_good_121.520
SRR6049661Rhizomagastrodiae_C368-T04_good_118.070
SRR6049662Rhizomagastrodiae_C368-T01_good_129.770
SRR6049663Rhizomagastrodiae_C368-T01_good_123.550
SRR6049664Rhizomagastrodiae_C368-T10_good_134.340
SRR6049665Rhizomagastrodiae_C368-T10_good_134.340
SRP279888GastroGastrodia elata tuber 17.97
JuvenJuvenile tuber28.25
Mother_GastroMother tuber of Gastrodia elata 13.11
Mother_JuvenMother tuber of Juvenile 15.37