Detail information of GWHGAAEX014510/evm.TU.scaffold_6.19


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG00901.00E-110Signal recognition particle receptor, beta subunit (small G protein superfamily)
nrgi|743776734|ref|XP_010918780.1|1.16E-130PREDICTED: signal recognition particle receptor subunit beta-like [Elaeis guineensis]
trEMBLtr|D7TDJ2|D7TDJ2_VITVI3.00E-130Putative uncharacterized protein {ECO:0000313|EMBL:CBI28565.3}
TAIRAT5G056701.00E-110signal recognition particle binding

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000311285841149739+
Transcript Sequence

Network for GWHGAAEX014510

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF09439.9SRPRB1903661.90E-38
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12272SRPRB, SRP102 Protein export map03060

Gene Ontology

GO term OntologyName
GO:0005525Molecular FunctionGTP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms51.850
SRR2545915Juvenile tuber54.380
SRP108465SRR5643513five period of Gastrodia elata14.870
SRR5643514five period of Gastrodia elata12.970
SRR5643515five period of Gastrodia elata16.080
SRR5643524five period of Gastrodia elata15.900
SRR5643525five period of Gastrodia elata19.510
SRR5643528five period of Gastrodia elata19.190
SRR5643658five period of Gastrodia elata19.030
SRR5643659five period of Gastrodia elata23.980
SRR5643660five period of Gastrodia elata24.210
SRR5643661five period of Gastrodia elata24.370
SRR5643662five period of Gastrodia elata24.760
SRR5643663five period of Gastrodia elata22.530
SRR5643664five period of Gastrodia elata26.800
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_122.930
SRR6049655Rhizomagastrodiae_C368-T10_good_111.690
SRR6049656Rhizomagastrodiae_C368-T07_good_122.780
SRR6049657Rhizomagastrodiae_C368-T07_good_126.040
SRR6049658Rhizomagastrodiae_C368-T04_good_123.360
SRR6049659Rhizomagastrodiae_C368-T04_good_123.840
SRR6049660Rhizomagastrodiae_C368-T01_good_124.880
SRR6049661Rhizomagastrodiae_C368-T04_good_127.420
SRR6049662Rhizomagastrodiae_C368-T01_good_120.850
SRR6049663Rhizomagastrodiae_C368-T01_good_117.380
SRR6049664Rhizomagastrodiae_C368-T10_good_116.610
SRR6049665Rhizomagastrodiae_C368-T10_good_116.610
SRP279888GastroGastrodia elata tuber 22.61
JuvenJuvenile tuber29.71
Mother_GastroMother tuber of Gastrodia elata 21.58
Mother_JuvenMother tuber of Juvenile 26.04