Gene detail

Detail information of GWHGAAEX014515/evm.TU.scaffold_6.25

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743765505\|ref\|XP_010912974.1\|	8.74E-162	PREDICTED: NAC domain-containing protein 8 [Elaeis guineensis]
Swissprot	tr\|Q6NQK2\|NAC8_ARATH	1.00E-86	NAC domain-containing protein 8
trEMBL	tr\|M0U9W4\|M0U9W4_MUSAM	2.00E-149	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP17050_001}
TAIR	AT1G25580	6.00E-86	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000003	1445019	1470742	-

Transcript Sequence
>GWHTAAEX014515 TATTTCGGTATAGTAAATGCCATAGCTTTCTTGGTGAGGAAGAATCGTGCATCCCCATCTCCCGATGTGCCAGCGGGCTCGCCGGAACAGACAAACCATGGTCCCGGTCGGATGAATCCATGCATCGTAGTGCGGTCCGAAGAGGTGGACTTCTCTCCCTCTCACTTTGTGTCGAGCGGAGCTCGAGGAATGGCGAGAGCGTGGCTGATAAATAGCCGTGGAATTGCCAAGAAGGTGAAGAATGCAACCCTCTATTCTAATTATCAAATCAGAGACTTTGCAACTGAAGCAAACCGTGAATGTCCCAATTGCAAGTTTCTGATTGATAATAGTGATGTTTCTGTGGACTGGCCTGGGCTTCCTGCTGGTGTAAAGTTCGACCCCACTGATGTAGAGCTTTTAGAGCATCTAGCAGGAAAGATTGGATTGGGAAATTCTAAGTCTCATATTTACATCGATGAATTCATACCAACACTTGAAGAGGACCAAGGAATTTGCTACACTCATCCTGGAAATCTTCCCGGTGCCAAAAAAGATGGGAGCAGTGCCCATTTCTTTCATAGAACATCAAATGCATATGCAACTGGATGCAAGAAGCGTAGGAAGATACAGAGTGAGTATGGTGTCTCTAAAGAATGTGTTAGGTGGCACAAAACTGGGAGAACCAAACCTGTGGTCGAGAACAGTGTTCGGAAAGGGTGGAAGAAGATAATGGTTCTTTACAAAAGCTTGGGGAGGGGCTGTAAGCCGGATAAGGCTAATTGGGTGATGCATCAGTACCATACCGGGACTGATGAAGAGGAAAGAGATGGGGAATTAGTTGTTTCAAAGGTTTTCTACCAGCACCCTGCAAAACAAGTCGATAGGGATGAGGCTGAGATGTTGCCAGATGAATTGGATAGTTCCAATATAAAGAATGGTCCGAGAACCCCAAAAACAGTCACTCCTCAGCCTCCTCGACATCCTCTCTCCAAAATAACATCTTTGTGTGAAACTGATGATCAGTATGATCCTCTTCTCTTGCCAGTTCAGGAAGAACGTCCGGAAGAGGAATCCGTACCTTCACTGGTGCCTATTGTACGACTGAAGGATGAGCATTTCAGCTCTATCTGGTGGGAAAGTGGAGAATTTCAAGCAATTCAGGAGCAACCGAAGTTGGAGAAGATTGACGAGTCATTGTTATGCCATGAAGTTCTCTATCCTTTCACTTCCAATGGGGAAACATCTCTACAGCTTCATGACCCGGATAGTACTGAGCACAACAAAGAACCGTTCAAAAGAGAATCAAATACAACTGATGGGTGGTTCCCTGGCTTCAATGACTTCGAAATTGACAGCTCGCCCAACTTTCATCTATCAGATTTTCAATTTGGCTCTCAAGATAGCATCATGAGCTGGTTGGATCGCATTTGAAGATCAGCAAGAGGGCGGCCTTTTGGATTGGCTTTCTTGACAAATATGATCGAGGAGCCGAGTTTTGAGCACAGCTTCTCAAGTGGGCTTTTATTATGATCACCATTTGGGTTGTTTATTGCTATTCGAAACCAGATGAGAATGCCATCAGCTAGCTATCAATTTTTGTAAAATGGCACATTGATTATTGGCTTTTTTGCATTATCATCAGATGTGAGGGCTTCTGTAACTTAACAATTTTCCATTCTTTTGGCCCCACTAATTTTTGTCTGAAACTTGCTGGAGATGGTTAATTTGCTTAGATGATTGCAGTCTCATGTGGCTGATCAATTGAAGCTTAGCTTTTATCAGTTTCTGTGATAGCTGTCTTCTACTTATGTGTGGCAATCCGTATCTGTTATGATTTGGGCTGGCTTGTTGGCTTTGCAGAAGGCTAACTTGATTGTTGGAATGGTGCGTATGTTTGTCATGTTTGAATTTGTATGCCTAAATTTGAGTTAGGACTAAGCATATGCTTGCTCTCGACATGGGATTTTTCACCTTTTATTTATCTATTGGTGGAAGCATTTCTTTCTCCCGTGTCCTTTTTTCATCTAAGGTTCTCCACACAGGATTCTTATATTTGTAGAGAATATTTTTTGCGACTATGATAGAATGCTTATA

Network for GWHGAAEX014515

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.14	NAM	84	224	5.20E-21

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.720
SRP064423	SRR2545915	Juvenile tuber	2.810
SRP108465	SRR5643513	five period of Gastrodia elata	5.020
	SRR5643514	five period of Gastrodia elata	4.200
	SRR5643515	five period of Gastrodia elata	3.240
	SRR5643524	five period of Gastrodia elata	3.420
	SRR5643525	five period of Gastrodia elata	6.730
	SRR5643528	five period of Gastrodia elata	5.870
	SRR5643658	five period of Gastrodia elata	6.820
	SRR5643659	five period of Gastrodia elata	4.520
	SRR5643660	five period of Gastrodia elata	4.810
	SRR5643661	five period of Gastrodia elata	4.970
	SRR5643662	five period of Gastrodia elata	4.830
	SRR5643663	five period of Gastrodia elata	5.540
	SRR5643664	five period of Gastrodia elata	4.970
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.810
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.050
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.020
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.220
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.820
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.770
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.000
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.020
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.220
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.570
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.790
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.790
SRP279888	Gastro	Gastrodia elata tuber	3.59
	Juven	Juvenile tuber	6.45
	Mother_Gastro	Mother tuber of Gastrodia elata	4.35
	Mother_Juven	Mother tuber of Juvenile	6.22