Detail information of GWHGAAEX014520/evm.TU.scaffold_6.35
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|72162575|ref|YP_290232.1| | 7.00E-96 | endoglucanase [Thermobifida fusca YX] |
| nr | gi|695070944|ref|XP_009382522.1| | 0 | PREDICTED: endoglucanase 3-like isoform X1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|O81416|GUN17_ARATH | 0 | Endoglucanase 17 (Precursor) |
| trEMBL | tr|M0RPM4|M0RPM4_MUSAM | 0 | Endoglucanase {ECO:0000256|RuleBase:RU361166} |
| TAIR | AT4G02290 | 0 | glycosyl hydrolase 9B13 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000003 | 1987884 | 1990111 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014520
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00759.18 | Glyco_hydro_9 | 48 | 501 | 8.10E-140 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH9 |
| Carbohydrate-Active enzymes Family | GH9 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01179 | E3.2.1.4 | Metabolic pathways | map01100 |
| Starch and sucrose metabolism | map00500 | ||
| Two-component system | map02020 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.480 |
| SRR2545915 | Juvenile tuber | 0.660 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.850 |
| SRR5643514 | five period of Gastrodia elata | 1.800 | |
| SRR5643515 | five period of Gastrodia elata | 0.950 | |
| SRR5643524 | five period of Gastrodia elata | 1.260 | |
| SRR5643525 | five period of Gastrodia elata | 6.480 | |
| SRR5643528 | five period of Gastrodia elata | 8.650 | |
| SRR5643658 | five period of Gastrodia elata | 0.750 | |
| SRR5643659 | five period of Gastrodia elata | 0.870 | |
| SRR5643660 | five period of Gastrodia elata | 0.400 | |
| SRR5643661 | five period of Gastrodia elata | 0.310 | |
| SRR5643662 | five period of Gastrodia elata | 0.240 | |
| SRR5643663 | five period of Gastrodia elata | 0.080 | |
| SRR5643664 | five period of Gastrodia elata | 0.720 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.700 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.650 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.380 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.620 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.470 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.550 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.140 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.990 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.130 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.560 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.560 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.11 |
| Juven | Juvenile tuber | 0.98 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.57 | |
| Mother_Juven | Mother tuber of Juvenile | 0.54 |