Gene detail

Detail information of GWHGAAEX014524/evm.TU.scaffold_6.43

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG3341	3.00E-28	RNA polymerase II transcription factor complex subunit
nr	gi\|672115115\|ref\|XP_008779739.1\|	6.71E-58	PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Phoenix dactylifera]
Swissprot	tr\|Q5M759\|VP221_ARATH	3.00E-56	Vacuolar protein sorting-associated protein 22 homolog 1
trEMBL	tr\|A0A067KVS9\|A0A067KVS9_JATCU	7.00E-58	Uncharacterized protein {ECO:0000313\|EMBL:KDP39103.1}
TAIR	7300783	3.00E-28	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000003	2842266	2853341	-

Transcript Sequence
>GWHTAAEX014524 CTCACTCACTTATTTAGGATTCACACTTCATATGGAATTATTTTTCTTTCGTATTTTAGTGGAGGTGCTTCCACAAAGTGGCATGTATCCATGACATATTGCATGCAGTGATATGATGAATGGTAAAAAATAATCAATTAAGTGATGTATTACTTTCATTCATAAGTTCAGCCATTTACATTATTAACTATCTACGTAGATATTCAAAAGATTATAAACCCACAAACACATTCATAATTATTCAATATTGTTCAACATTTAATATAATCTATTTCAAGGGCAATCTAATTCAAGGTGGCCTATACACTAGCGCTGCCGCCGCCACCACCACTACCAAACTTTAGTCCTACTAAGTGGGGTTTGTTACATGAATTTTTTGTATCCATAATTATTTAAGGATTCTACATCAAATACAATCTAGTTCAAGGACAATCTAATTTAAGGTGGTTTATACAGCTCCACCACCACTACCACCATCAAGCCTTAATCCTACTAAGTGGTGTTGGCTTTATAAATCCTTTGTATTCATTGTGCATCATCAAATAGAACCCCTCCTTAAGTTGCAAAATAGAGAAAGATCTTTTTGAATGGTTTCTTAATTTAATGCATCAAGCTTAATATAAATATAAATATATTATAATTTTGAGATTCAAATTTTATTCTTTATTTTTAAAATATATCAAATTTTTGTTTTGCTGCAGTTAGGGTGCAAAGTAAAACATTGCCCCACTCTTTAAAATTTATCCGTTTGTTTTGCAGGGTTAGGAATACAATATAAAATTTTTGGATAAAATTTTAGCCGAAACCACCAAAATCCTAGCATCCAGAATACCAAAAATCAAGTGTATTCTAAATTTCAAGCTCACAGAAGGTTTTTATTTTGCATGCTTATGGCCATTTTTGCCTTAAAATGACGCCGTAGTCGGCCTTCCCTGGCCCTTGATGGCCCTTGCTAATTTTTGTTGGCCTTTATCAGCCTTTGAAAGCCTTCACCGGCCTTCCCCAGTAAAGTAAATTTTCTCGTTTAGAGCATAAAAGAATGCCTTATCAAATGGGACTTTTGGTTTAAAACATGCTCTAAAAATTTATACAAACTAATTACTTCAACTAAACATATAAAATAGCAGGTGAAGTAATTACCTCACCCTCAAAATTTTACAATCAAAACTAAACCTCTTTAACAAATTTAGCTAAATGTTAATATTATTACAGGAGTTAAATATGCTTATTGGGCCTTGCCAATCTTGATCATCTTTTCATATTTATAAAGCCCTAGTTGAAAATTGGAAATATATCGTTGCTGCTTCTCTTTGCCTTGGTGGAAGAGGACGCTCTTCACATCTTATCTTTGTGCCTTCTTTGCCACCTATGCATTCAATTGATGTGCAAACAGGGAGACCTCTCTCTGGAGTGGAGGGGTATATCTATGACCTATCAAATTTTTCTAGAAAAATTAACTTGGAAATCGTGCAATTAGTTAGTGATCTCAATACAAACAATATTTAAATCAATTGATATAGTATGTTAACACTTAAAATAAAGTGAATGATAGAAATACAAACAACTTCTTAGCTTTCTTTTTTGTGAGTGTACTACTTTCTTTTTCCTCTTTGATCTTAGATGTCAGAGACTGCATTTTGATTATCTATCCAAAATAAATCCGTATGTTATATGTTTGGTTTGCTTGATAGGCTAATAAAAATTAAAAGTTATATAACCATTTAGTAATATTGCGTGGTAGATCGATTGCCTGTCATGTATTAATATATAATTTTTATTTTTAAGGAAATGAGCTGAACACAAACTTAGTTAATCAAACATAACAAAGATCAACATGAATGTAAATATAATCTCTGTAATATATGGGCTAGTTTGGTTTGTGGACATTTTATTCTTTAAGGTGTCTGTGGTGCGAGTGTTCTTCAATACTTTTTTAATGGGTGTAATTGTTTTGGTGCAAACTGCCTGCTTAAAAATCATCTATCCTTTTTTTCTGAAATTCAGTGACTCACTGCATGCCATGAAATTGATTTCCTAGCAGTTGATGACTCCTAGCCACACCATTCTGATGTGAATTCATCCATTCTCCCTAGAATTGATGGTTGCCGTGGAGAAATTTAAATATGAGCGGACATCTGATGTCACTATACAATAATGTGATTGCAATTTTCTGGAAGTTTGAGATGAGATCACAGTGAACGAAACAGCCTCAATATACCAATAGCACCACATAACATAACATTGCATCAATATGTCAGTGAACCTAACATTACCTATGATTAATTGTTAGTGTTACTCAGGTTAAGCACAAGCTAGTGAGCTTGAAAAGGATGATCCAAACACAGACATGTGCCAAGTTTGAACAAATTTAAATATGAGCCAAGCTCGAATAAATTAAGTGTCAAGTGAGTGAAGCTTGAACACATACAAAGCTAGTTCAAGTTTGTTCATTTACTCTAATTGGAGATTGAAACATCTTTGCTTTCTTCGTCCTCTAGTTTATCTTGCTGGAAAGTGTCATAACATCTTTTGTTCTATGTAAAGGCACCTACCAACTGTTCAATATTGAAGGCATCAAATACACAACATGAGGAGAAGGCCTGGAATTGCTGGTTTACAAACTGCTGCTGCTGCTCGTGAGCAATATCGACTGGTTGGAGAAAATTTTGCAAAGGTCAAAACTGATCTCATGAAAGAGCAGCTTGCAACATTTAGATCTCAATTGGAAGAGTTTGCTCAGAAGCACAAGAATGACATTCGCAAAAATCCTACTTTCAGATCGCAATTTCATGAGATGTGTGCTAAAGTTGGAGTGGATCCCCTAGCTTCTAATAAGGGATTTTGGTCTGAGTTACTGGGAATTGGTGCTTTTATTATGAACTTGGTATTTATTTTTTGATTTCTTGTCTTGGAACTCTTGGTATTGTTTTGCTAGTTTGGCTTCCATCATGCATGTCCTTGCTCATTTTTCATTGAGAAAAGTGCATTATTTTTCCCATTTCATTTTTATATTATGACATTGTTATTATTGTGCTACTGTACAATCTCATGGTTGACTGGCTTTGCTTATGCAAGTTACAAACTCATTGTCAAGTTTTTAGTTTGCAAGCTTATTGACATGTATTTGTTTTGTTATTGCATATTTGTAAATTATAAATATGCATAGCTTTTACTTGG

Network for GWHGAAEX014524

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04157.15	EAP30	6	99	1.10E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12188	SNF8, EAP30	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.770
SRP064423	SRR2545915	Juvenile tuber	1.390
SRP108465	SRR5643513	five period of Gastrodia elata	0.430
	SRR5643514	five period of Gastrodia elata	0.650
	SRR5643515	five period of Gastrodia elata	0.750
	SRR5643524	five period of Gastrodia elata	0.370
	SRR5643525	five period of Gastrodia elata	0.410
	SRR5643528	five period of Gastrodia elata	0.210
	SRR5643658	five period of Gastrodia elata	0.220
	SRR5643659	five period of Gastrodia elata	0.720
	SRR5643660	five period of Gastrodia elata	0.650
	SRR5643661	five period of Gastrodia elata	1.100
	SRR5643662	five period of Gastrodia elata	1.140
	SRR5643663	five period of Gastrodia elata	1.050
	SRR5643664	five period of Gastrodia elata	0.900
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.280
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.180
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.160
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.080
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.070
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.030
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.000
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.180
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.180
SRP279888	Gastro	Gastrodia elata tuber	0.21
	Juven	Juvenile tuber	0.13
	Mother_Gastro	Mother tuber of Gastrodia elata	0.08
	Mother_Juven	Mother tuber of Juvenile	0.15