Gene detail

Detail information of GWHGAAEX014531/evm.TU.scaffold_6.51

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|88602204\|ref\|YP_502382.1\|	6.00E-12	hypothetical protein Mhun_0913 [Methanospirillum hungatei JF-1]
KOG	KOG1128	0	Uncharacterized conserved protein, contains TPR repeats
nr	gi\|743828114\|ref\|XP_010933771.1\|	0	PREDICTED: tetratricopeptide repeat protein 27 homolog [Elaeis guineensis]
trEMBL	tr\|F6HGI8\|F6HGI8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51334.1}
TAIR	AT5G17270	0	Protein prenylyltransferase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000003	3338791	3362218	-

Transcript Sequence
>GWHTAAEX014531 CAAAATATTGAGTTCGGCATAAACACAAATAAATTGGTCTAACCGAATGAGTCTAACGCAAACGTGGTGGCAACGCAAAAGCCCTAAACCCCGCGCTCGACATGACGAAATCCGATAATGGCATCCTCAAATCCGTCGAACTCCGCCTCCTTCGCTGTACCATCTCAGGCGAAAATCCTCTCTCCTCCTGGTCTCCAAATTCCAACTCGGAAGATCCCCTCGGCCCTTCTTTGTGCGACCTGCTAGGCGCCATCGAACGAGGGGATTACCCGGCTGCACTCTCCTCCGACGCTGCTCGCCTTGTTTTCAGCTTTGCGAGTTTATGGGAGTTCGAGAACTCAGTTTCCTCTGCCGCAGCGTTCTACGCCGAAGTAGAACGGAGCATCGTCGCTTTTCTCTCCGATGGTGCCGCTGAGGAGCCCTTGTTGCGGGTTGTCTCGGAGCATAGGGTCGCGGTGGTTCTTTGTGTCGGAGTTGCAGCGCTTCTGGCTTTCCTGCAGCAGAATGTGATCGGGCCTGTAAGCAAGTTTTCTCGTTTCCCTCTGCCGTTTCCAAATTCAGAAAAGACCGGGGCTGATGAATGTGGCGGAGAATGGGATTCGTGGGCTCGGCAGCAACTTACGGCTGTTGGCTGTGACCTGCTGGGGAGGTTCTCCCTGTTGCAGTATCTTGAGTACGCCAAATTGATATTCATAAATATAAACGAATTTTGCAAAGCCGGAGTGTCCCACTGCTCCAATTTGGCCAAGACCACTGCTTGGTGGATGTGTAGATTATTGCTCCTTCAACAAAAAATTTTGGATGATCTTTTGTCATCATTATACAATATGCTGCAAGTGTTTAAGAATGAAGCTTTACTTCAATTTGGTGAGGTCAAAAATGGTGCTGATTACTGGGGAACATTGTTAATTGAAAAAGAAGCTTTGATATTAGCATCCACGGTGCAACTTGAAGCAGGATTAATAGAATATCATTATGGCAGAATTGATTCTTCGAGGTTGCATATTACAAATGCTGCAGCAACATCTGGATTGGATCTCTCTGTTACCGGAATTCTAGGCTATCGGACAATCCACCAGGTGGATGCTAAGCCTCAACTTGTACTTATTGCTAATACAGGCCAGCAAGTTATGGGTGAAGGAAGCTTGGAATCATTCTCTCAGGAACAACTTGATTGTCAAAAAAATGTTGTTGGAAAGACTACTGGATCATCACTGGTTCAATCTGACAGTCGATCATGCCCAAATAAGTTGGATTTTCAATCTAATAGGCATCATGAATGTGACATATTAATGGCCCCAAGATTGATACATGATTTCACCTCCATTGGAACCAATGGGGAATTTGCTATAATTGGCAAGGACGTGAGGTTAACTTCAGTGCAACAAGCCATCATATTAGCACAATGCCTTCATCTTCAAAGAAGCAAGCGTGACGATGAATTGTCAAGGTGGGAAATGGCCCCATATATAGAAGCTATTGATTCACAAAACCAATCTTATTACATTATTAGCTGTTCATGTGATATACTGCGCATTAGATGGGAGACCACTCGCAGTCGTACAAAACAACGTGCTTTAGTAATGATGGATAAACTGGTCGAAGCTGTTTATGAATCAAGTCCCATGGCTCCTCAAAGGATTCAATTAGCTTTTAGTGTATATACACCAACCATATCAGCATTGAGAAAGGAATATGGGGAGCTTTCTATTGGATGTGCCTTGGTTGGAGAGGCCTTGAAGATTTTTGAAGATCTTGAACTATGGGATAGTTTGATATATTGTTACCGCTTACTGGATAAAAAGGCAGCAGCTGCAGACCTTATTAATGCAAGGCTCCGTGATGCTCCCGCTGACCCAAAATTGTGGTGTTCATTAGGTGATGTAACCAATAATGATGATTGCTATGAGAAAGCGCTTGAAGTCTCAAATAGGAAGTCCACTCGAGCTATGCGTTCTTTAGCTCGTAGTGCATATAACAGAGGTGATTACGAGATAGCGAAGTCCCTATGGGAATCTGCAATGGCAATAAATTCCTTGTACCCTGATGGTTGGTTTGCGCTAGGAGCGGCTGCATTAAAGGCTAAAGATATTGACAAAGCACTTGATGGGTTTACTCGAGCTGTGCAGTTGGATCCTGAAAATGGAGAAGCTTGGAACAATGTTGCCTGTTTGCATATGATTAAGAAGAAAAGCAAAGCAGCTTTCATTTCTTTCAAGGAGGCTTTGAAATTTAAGAGGAACTGTTGGCAACTCTGGGAAAATTATAGTCATGTTGCTGTAGATATAGGCAACTTTTATCAAGCACTTGAGGCAATAAAAATGGTACTTAACTTGTCATCAAATAAAAGAGTAGATTATGAATTGTTGGATAAGATACTGACAAAGATTGAAGATGCAAATTTTTCTTGTTTTGCCACTGAAGTTCAAATTGCGTATGCATCCCAAGAAGATTTAGTTTTGGATTCTTGTGGAGATTCAAAAAATTCTGTTCCTGTGTTTGAAGAGCGAGAGAAGGACTTGCTGGTTTCCATTATTGGTAGCATCTTCCAGCAGGTCATAAAAAATGGTGGTGGTGGTGAAGAAATTTGGGGCCTATATGCTAGGTGGCACAAGATGGAAGGCAACCTATCCATGTGCTCTGAAGCCCTTTTGAAGCAAATTAGGGCATATCAGGGTTCAGATCTATGGCATAATTTTGAACGGTTTAAGAAATTTGCTCGAGCCTCTTTGTTGTTATGCAATGCTTACATGGAAATAGCTTCCTCCAATCAGGGATGCCGTGAACTCTTTGCAGCTGAGATGCATTTAAGGAACTCCGTAAAGCAGGCTGTGAACTTCTCAGAAACCGAGGAATTCCAAAATCTTCAGGCCTGCCTGGATGAAATAAGGAAACGACTTGATAATACTAGTAGCGTTTCTTAGATATTGCAAGTTTCTACACTAATTTCATTGTTGTAAAAGATTTGCTTGGTAATCGTCAACGCAACCTCGGTCCTCAGTCGAGCGCACTAGTCAAATCGCTTCCGCTGCGGAGAGTGGTACTGGAAGGTTTCAGATTTTTTATTACCAACATGTATAAGCAAGTCTGAATCAAGTATGCAGCAATATTTTGGCCTTTAGAAGGCAAAAATTTAACCACAAATATAGAAGAAGATTTCAGGGTGCTCTAAAAACTACGTTCTGCAACTGAATCTCTTTAGAAACTAACAACTGACGAGTTTGGGAGGTGCTTTACATTTGTTTAATTAAGGATATTCGAGAAGATGGCTCTCTTTTTTT

Network for GWHGAAEX014531

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13432.5	TPR_16	620	680	1.70E-06
PF13181.5	TPR_8	683	715	0.0057

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.710
SRP064423	SRR2545915	Juvenile tuber	9.450
SRP108465	SRR5643513	five period of Gastrodia elata	5.060
	SRR5643514	five period of Gastrodia elata	6.050
	SRR5643515	five period of Gastrodia elata	4.700
	SRR5643524	five period of Gastrodia elata	4.270
	SRR5643525	five period of Gastrodia elata	3.930
	SRR5643528	five period of Gastrodia elata	2.490
	SRR5643658	five period of Gastrodia elata	1.980
	SRR5643659	five period of Gastrodia elata	7.580
	SRR5643660	five period of Gastrodia elata	7.360
	SRR5643661	five period of Gastrodia elata	6.860
	SRR5643662	five period of Gastrodia elata	7.030
	SRR5643663	five period of Gastrodia elata	6.030
	SRR5643664	five period of Gastrodia elata	6.980
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.110
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.690
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.630
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.010
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.300
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.290
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.450
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.250
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.330
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.190
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.030
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.030
SRP279888	Gastro	Gastrodia elata tuber	8.97
	Juven	Juvenile tuber	8.89
	Mother_Gastro	Mother tuber of Gastrodia elata	4.51
	Mother_Juven	Mother tuber of Juvenile	3.85