Detail information of GWHGAAEX014541/evm.TU.scaffold_6.70


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|557694902|ref|YP_008797956.1|9.00E-14ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
KOGKOG04172.00E-66Ubiquitin-protein ligase
nrgi|731393178|ref|XP_010651365.1|4.73E-72PREDICTED: constitutive photomorphogenesis protein 10 isoform X1 [Vitis vinifera]
Swissprottr|Q9LJD7|COP10_ARATH1.00E-65Constitutive photomorphogenesis protein 10
trEMBLtr|F6GUK1|F6GUK1_VITVI2.00E-72Putative uncharacterized protein {ECO:0000313|EMBL:CCB43796.1}
TAIRAT3G135502.00E-66Ubiquitin-conjugating enzyme family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000346057634618091+
Transcript Sequence

Network for GWHGAAEX014541

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.25UQ_con361463.30E-39
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K20217UBE2E Ubiquitin mediated proteolysis map04120

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms69.970
SRR2545915Juvenile tuber61.660
SRP108465SRR5643513five period of Gastrodia elata24.030
SRR5643514five period of Gastrodia elata25.380
SRR5643515five period of Gastrodia elata28.450
SRR5643524five period of Gastrodia elata24.130
SRR5643525five period of Gastrodia elata35.310
SRR5643528five period of Gastrodia elata32.350
SRR5643658five period of Gastrodia elata38.640
SRR5643659five period of Gastrodia elata52.610
SRR5643660five period of Gastrodia elata58.220
SRR5643661five period of Gastrodia elata52.310
SRR5643662five period of Gastrodia elata54.510
SRR5643663five period of Gastrodia elata53.780
SRR5643664five period of Gastrodia elata66.130
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_137.510
SRR6049655Rhizomagastrodiae_C368-T10_good_181.660
SRR6049656Rhizomagastrodiae_C368-T07_good_146.420
SRR6049657Rhizomagastrodiae_C368-T07_good_158.110
SRR6049658Rhizomagastrodiae_C368-T04_good_156.430
SRR6049659Rhizomagastrodiae_C368-T04_good_150.040
SRR6049660Rhizomagastrodiae_C368-T01_good_145.560
SRR6049661Rhizomagastrodiae_C368-T04_good_153.730
SRR6049662Rhizomagastrodiae_C368-T01_good_132.900
SRR6049663Rhizomagastrodiae_C368-T01_good_136.150
SRR6049664Rhizomagastrodiae_C368-T10_good_139.890
SRR6049665Rhizomagastrodiae_C368-T10_good_139.890
SRP279888GastroGastrodia elata tuber 73.32
JuvenJuvenile tuber46.89
Mother_GastroMother tuber of Gastrodia elata 23.30
Mother_JuvenMother tuber of Juvenile 35.73