Gene detail

Detail information of GWHGAAEX014548/evm.TU.scaffold_6.79

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|71282552\|ref\|YP_270567.1\|	3.00E-07	serine protease [Colwellia psychrerythraea 34H]
KOG	KOG4628	1.00E-134	Predicted E3 ubiquitin ligase
nr	gi\|731911113\|gb\|AIZ68182.1\|	0	E3 ubiquitin-protein ligase RNF13-like protein [Ornithogalum saundersiae]
Swissprot	tr\|Q10R93\|RMR1_ORYSJ	2.00E-155	Receptor homology region, transmembrane domain- and RING domain-containing protein 1 (Precursor)
trEMBL	tr\|M0TE91\|M0TE91_MUSAM	2.00E-162	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P03010_001}
TAIR	AT1G71980	1.00E-134	Protease-associated (PA) RING/U-box zinc finger family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000003	4956636	4967083	+

Transcript Sequence
>GWHTAAEX014548 TTGAAAAAAATAGCCAAACCATACTTCCGCCCTCCAATGTAGGTTGTAGAGCGTTCTAGGGGGTTATCAAGTGGAATATAGAACAATCCCAAGAAATCCTGCACTGATTGGTCTCATCTCCCCTCAGAATTTCAACCTCGTCGGCCATTCCCTTCTTCCTCATCTCCTACTACATGCCCTCATCTCATGGAAGCCGATGTCTCCATCCCTTTCAGTGTTCTGTAATTCAATCGATTCGGTGCTGCCAGGAATCCAGCTGGGACGTGAAGCGTTGGAAGTGGATTTAGATTTGCGGGTTATCTGCTCACTTCTTTTGATTGGGAATTTGTTATCGTGTTTGCTGAATTGGACATGGGCTCGCTTGGTACAAAGCGCGGAGGGAACCTTTTGATGCTTTTTTCTGTTCTCAGTTTATTGGCAAAGTTCGCTGGAGCAAATCTAGTGTTAATTGGGAAAAACGTATCATTGTCTTTTAATGACCTTGAGGCGAATTTTGCTCCATCAGTCAAAGGATCTGGTGAATGTGGGACATTATATTTAGCTGATCCTATTACTGCTTGTACTCGGCTTAAAAATAATGCTGTTGAAGGCCCACTTTCTCCCTTTGTGCTAATTATAAGAGGAGGATGCGCATTTGATGATAAAGTTAGAAATGCACAGAATGCTGGGTTCAAGGCCGCTATTGTGTTCGACAATGAAGATGGTGGCTCCTTGGTTTCAATGGCAGGAACTGCAGGTGGTGTTCACATTCATGCAGTTTTCATCTCTAAATCCTCCGGCGAGACATTGAAGACATATGCTGGTCACACTGATGTTGAGCTGTGGATTATTCCGACCTTTGAAAATTCGGCATGGTCAATCATGGCCATCTCTTTTATTTCTCTGCTGGCGATGTCTGCCGTGCTTGCAACGTGTTTCTTCGTACGTAGACATCGTGTAAGGCGTGAACAGCCCAGGTCTTCCAATGTCAGAGAGTTCCATGGAATGAGCAGCCAGTTGGTAAAAGCAATGCCGAGTCTCATATTTACATCAGTTCGGGAAGATAATTGCACTTCATCAACTTGCGCTATTTGCTTGGAGGACTACTGTGTTGGTGAGAAGCTCAGAATTCTGCCATGTTGTCACAAGTTCCATGCATTCTGCGTGGATTCTTGGCTGACATCTTGGAGAACATTCTGCCCTGTTTGCAAAAGGGATGCAAGGAGTGCCATGACCATTCCTCCACCATCCGAATCAACCCCTCTCATTTCTGGCTCAAACGCATCGCCTGTAATCCTATCTTCATTCCGCTCTTCCTTCCGCTCCTCCTTACACTCTTCCTTCCGCTCCTCCTTCCACTCGTTGGCCGCCGGTTCTCCATCTTCGGCAATACCGATCGGCCACACGCCGGCCTCTAGAACCCATTCCTTCTCCAATATTCCTCGTCCGCCCGCCCCGCAGAGATCATCCCTTAACTTGATGGTGCCCATCCACACAAGCAGGAGCACTGCAGAGCTCAGGAACGCCTCAATGTCCTCCTACAGATCTTATGCTTCCAGCCTTCCTTCTCCCTACTCTCCATCCTATGTGTCTAGGCAGGGCTCCAATTATAATAATCCCAGCCCTCCCAGTTATGCTTCCCAGGGCTACCTTGGCAGGTCTTCGAGCCGGCATTCCTATCTTCACCATTGTGAATCCGGAACGAGTCTCTCGGCCATGGACTCCACACATTCTCTTCCAGGATGCTCTTGAGCTGCGTTTTTTAGAAGCTGGATTTTAACCCATGGGAGTTTGTAAATTCTTGTCTCTAATGTGGAATTTGGTGCAATTGCAAAGTTTCTGTTGGGTTTTCTGTGGTTTGTTGTAGATACTACTGCGGTTGAGGGGCTGATGAGCACTGTATCGACACTTCTCTTGTTTTTTTAGTTGATTTGTACTGATTTTACTGAACGATTTTGCTTATCATATAACTACTTGTTCAGGGTTCTCATAAGTTAATACTTTATATGTACGTTTTGACTCCTCTTATCAATAA

Network for GWHGAAEX014548

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02225.21	PA	81	146	3.50E-09
PF13639.5	zf-RING_2	237	280	3.00E-10

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	71.340
SRP064423	SRR2545915	Juvenile tuber	91.480
SRP108465	SRR5643513	five period of Gastrodia elata	40.020
	SRR5643514	five period of Gastrodia elata	39.540
	SRR5643515	five period of Gastrodia elata	36.910
	SRR5643524	five period of Gastrodia elata	41.910
	SRR5643525	five period of Gastrodia elata	69.790
	SRR5643528	five period of Gastrodia elata	56.670
	SRR5643658	five period of Gastrodia elata	79.060
	SRR5643659	five period of Gastrodia elata	68.010
	SRR5643660	five period of Gastrodia elata	71.170
	SRR5643661	five period of Gastrodia elata	80.730
	SRR5643662	five period of Gastrodia elata	66.470
	SRR5643663	five period of Gastrodia elata	67.710
	SRR5643664	five period of Gastrodia elata	73.670
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	47.920
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	49.800
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	46.240
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	43.300
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	40.910
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	41.960
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	41.060
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	44.480
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	37.240
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	35.670
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	40.400
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	40.400
SRP279888	Gastro	Gastrodia elata tuber	58.13
	Juven	Juvenile tuber	35.31
	Mother_Gastro	Mother tuber of Gastrodia elata	32.76
	Mother_Juven	Mother tuber of Juvenile	31.61