Detail information of GWHGAAEX014552/evm.TU.scaffold_6.91
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|512551317|ref|YP_008089223.1| | 3.00E-39 | Beta-galactosidase [Chthonomonas calidirosea T49] |
| KOG | KOG0496 | 0 | Beta-galactosidase |
| nr | gi|695075722|ref|XP_009385110.1| | 0 | PREDICTED: beta-galactosidase 7 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q8GX69|BGA16_ARATH | 0 | Beta-galactosidase 16 (Precursor) |
| trEMBL | tr|M0RVL3|M0RVL3_MUSAM | 0 | Beta-galactosidase {ECO:0000256|RuleBase:RU000675} |
| TAIR | AT1G77410 | 0 | beta-galactosidase 16 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000003 | 6049443 | 6097405 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014552
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01301.18 | Glyco_hydro_35 | 43 | 349 | 1.30E-105 |
| PF02140.17 | Gal_Lectin | 731 | 808 | 2.80E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH35 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0030246 | Molecular Function | carbohydrate binding |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.530 |
| SRR2545915 | Juvenile tuber | 4.980 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.250 |
| SRR5643514 | five period of Gastrodia elata | 4.970 | |
| SRR5643515 | five period of Gastrodia elata | 3.840 | |
| SRR5643524 | five period of Gastrodia elata | 4.790 | |
| SRR5643525 | five period of Gastrodia elata | 7.500 | |
| SRR5643528 | five period of Gastrodia elata | 4.820 | |
| SRR5643658 | five period of Gastrodia elata | 6.160 | |
| SRR5643659 | five period of Gastrodia elata | 3.120 | |
| SRR5643660 | five period of Gastrodia elata | 3.170 | |
| SRR5643661 | five period of Gastrodia elata | 3.740 | |
| SRR5643662 | five period of Gastrodia elata | 3.460 | |
| SRR5643663 | five period of Gastrodia elata | 4.330 | |
| SRR5643664 | five period of Gastrodia elata | 3.930 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.420 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.380 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.670 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.620 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.740 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.940 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.080 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.110 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.330 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.690 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.690 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.36 |
| Juven | Juvenile tuber | 8.67 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.19 | |
| Mother_Juven | Mother tuber of Juvenile | 3.88 |