Detail information of GWHGAAEX014553/evm.TU.scaffold_6.95
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|334338180|ref|YP_004543332.1| | 4.00E-42 | glycoside hydrolase family protein [Isoptericola variabilis 225] |
| KOG | KOG0496 | 0 | Beta-galactosidase |
| nr | gi|743877127|ref|XP_010907797.1| | 0 | PREDICTED: beta-galactosidase 3 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q5N8X6|BGAL3_ORYSJ | 0 | Beta-galactosidase 3 (Precursor) |
| trEMBL | tr|D7SWF1|D7SWF1_VITVI | 0 | Beta-galactosidase {ECO:0000256|RuleBase:RU000675} |
| TAIR | AT5G63810 | 0 | beta-galactosidase 10 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000003 | 6381028 | 6461335 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014553
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01301.18 | Glyco_hydro_35 | 36 | 341 | 1.30E-109 |
| PF02140.17 | Gal_Lectin | 775 | 852 | 4.10E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH35 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0030246 | Molecular Function | carbohydrate binding |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 22.880 |
| SRR2545915 | Juvenile tuber | 18.430 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.170 |
| SRR5643514 | five period of Gastrodia elata | 11.830 | |
| SRR5643515 | five period of Gastrodia elata | 10.690 | |
| SRR5643524 | five period of Gastrodia elata | 8.820 | |
| SRR5643525 | five period of Gastrodia elata | 9.910 | |
| SRR5643528 | five period of Gastrodia elata | 18.630 | |
| SRR5643658 | five period of Gastrodia elata | 18.790 | |
| SRR5643659 | five period of Gastrodia elata | 5.050 | |
| SRR5643660 | five period of Gastrodia elata | 2.100 | |
| SRR5643661 | five period of Gastrodia elata | 8.290 | |
| SRR5643662 | five period of Gastrodia elata | 2.700 | |
| SRR5643663 | five period of Gastrodia elata | 6.020 | |
| SRR5643664 | five period of Gastrodia elata | 3.820 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 35.290 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 34.600 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 37.760 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 33.320 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 39.560 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 41.550 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 39.680 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 46.170 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 41.690 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 40.610 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 35.480 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 35.480 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 23.15 |
| Juven | Juvenile tuber | 7.24 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.29 | |
| Mother_Juven | Mother tuber of Juvenile | 4.74 |