Detail information of GWHGAAEX014554/evm.TU.scaffold_6.98
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|256831356|ref|YP_003160083.1| | 4.00E-43 | beta-galactosidase [Jonesia denitrificans DSM 20603] |
| KOG | KOG0496 | 0 | Beta-galactosidase |
| nr | gi|743813552|ref|XP_010929755.1| | 0 | PREDICTED: beta-galactosidase 15 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q0INM3|BGA15_ORYSJ | 0 | Beta-galactosidase 15 (Precursor) |
| trEMBL | tr|M0S9W4|M0S9W4_MUSAM | 0 | Beta-galactosidase {ECO:0000256|RuleBase:RU000675} |
| TAIR | AT2G32810 | 0 | beta galactosidase 9 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000003 | 6580588 | 6674853 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014554
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01301.18 | Glyco_hydro_35 | 44 | 348 | 4.30E-112 |
| PF02140.17 | Gal_Lectin | 792 | 869 | 7.30E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH35 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0030246 | Molecular Function | carbohydrate binding |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.850 |
| SRR2545915 | Juvenile tuber | 14.750 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.840 |
| SRR5643514 | five period of Gastrodia elata | 9.270 | |
| SRR5643515 | five period of Gastrodia elata | 8.110 | |
| SRR5643524 | five period of Gastrodia elata | 9.720 | |
| SRR5643525 | five period of Gastrodia elata | 6.980 | |
| SRR5643528 | five period of Gastrodia elata | 5.280 | |
| SRR5643658 | five period of Gastrodia elata | 6.240 | |
| SRR5643659 | five period of Gastrodia elata | 7.610 | |
| SRR5643660 | five period of Gastrodia elata | 6.770 | |
| SRR5643661 | five period of Gastrodia elata | 5.750 | |
| SRR5643662 | five period of Gastrodia elata | 5.350 | |
| SRR5643663 | five period of Gastrodia elata | 7.980 | |
| SRR5643664 | five period of Gastrodia elata | 6.980 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.040 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.540 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.160 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.500 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 20.910 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 22.990 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 19.150 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 22.750 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 29.310 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 27.770 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.250 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.250 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.28 |
| Juven | Juvenile tuber | 15.87 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 11.08 | |
| Mother_Juven | Mother tuber of Juvenile | 14.69 |