Detail information of GWHGAAEX014557/evm.TU.scaffold_6.103


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|427736204|ref|YP_007055748.1|0ATP-dependent chaperone ClpB [Rivularia sp. PCC 7116]
KOGKOG10510Chaperone HSP104 and related ATP-dependent Clp proteases
nrgi|743805845|ref|XP_010927528.1|0PREDICTED: chaperone protein ClpB3, mitochondrial [Elaeis guineensis]
Swissprottr|Q0E3C8|CLPB3_ORYSJ0Chaperone protein ClpB3, mitochondrial (Precursor)
trEMBLtr|A0A067KNZ3|A0A067KNZ3_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP33529.1}
TAIRAT2G251400casein lytic proteinase B4

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000368446676876362-
Transcript Sequence

Network for GWHGAAEX014557

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02861.19Clp_N1141646.80E-13
PF02861.19Clp_N1922413.80E-07
PF00004.28AAA3004311.80E-13
PF07724.13AAA_26968652.00E-53
PF10431.8ClpB_D2-small8729516.00E-22
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03695clpB Longevity regulating pathway - multiple species map04213

Gene Ontology

GO term OntologyName
GO:0042026Biological Processprotein refolding
GO:0009408Biological Processresponse to heat
GO:0019538Biological Processprotein metabolic process
GO:0005524Molecular FunctionATP binding
GO:0005737Cellular Componentcytoplasm

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms37.500
SRR2545915Juvenile tuber33.060
SRP108465SRR5643513five period of Gastrodia elata13.960
SRR5643514five period of Gastrodia elata14.230
SRR5643515five period of Gastrodia elata13.000
SRR5643524five period of Gastrodia elata12.920
SRR5643525five period of Gastrodia elata25.710
SRR5643528five period of Gastrodia elata28.950
SRR5643658five period of Gastrodia elata19.520
SRR5643659five period of Gastrodia elata25.240
SRR5643660five period of Gastrodia elata26.180
SRR5643661five period of Gastrodia elata26.100
SRR5643662five period of Gastrodia elata17.630
SRR5643663five period of Gastrodia elata24.310
SRR5643664five period of Gastrodia elata22.620
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_122.920
SRR6049655Rhizomagastrodiae_C368-T10_good_117.300
SRR6049656Rhizomagastrodiae_C368-T07_good_123.730
SRR6049657Rhizomagastrodiae_C368-T07_good_126.720
SRR6049658Rhizomagastrodiae_C368-T04_good_122.800
SRR6049659Rhizomagastrodiae_C368-T04_good_126.790
SRR6049660Rhizomagastrodiae_C368-T01_good_123.760
SRR6049661Rhizomagastrodiae_C368-T04_good_125.390
SRR6049662Rhizomagastrodiae_C368-T01_good_119.360
SRR6049663Rhizomagastrodiae_C368-T01_good_118.790
SRR6049664Rhizomagastrodiae_C368-T10_good_117.400
SRR6049665Rhizomagastrodiae_C368-T10_good_117.400
SRP279888GastroGastrodia elata tuber 25.56
JuvenJuvenile tuber33.67
Mother_GastroMother tuber of Gastrodia elata 9.98
Mother_JuvenMother tuber of Juvenile 16.99