Gene detail

Detail information of GWHGAAEX014558/evm.TU.scaffold_6.105_evm.TU.scaffold_6.104

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|108762272\|ref\|YP_629357.1\|	6.00E-114	ABC transporter permease [Myxococcus xanthus DK 1622]
KOG	KOG0055	0	Multidrug/pheromone exporter, ABC superfamily
nr	gi\|743757723\|ref\|XP_010923337.1\|	0	PREDICTED: ABC transporter B family member 11-like [Elaeis guineensis]
Swissprot	tr\|Q9FHF1\|AB7B_ARATH	0	ABC transporter B family member 7
trEMBL	tr\|A0A067JEJ6\|A0A067JEJ6_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP21188.1}
TAIR	AT5G46540	0	P-glycoprotein 7

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000003	6993655	7074360	-

Transcript Sequence
>GWHTAAEX014558 CCGTGAGAGATGGAAGTAGAGAAGGTGGCCTTCTACAAGCTTTTTATCTTCGCAGACAAGTATGATGTAGCTTTAATGGCTGTCGGTTCGGTGTCGGCGGCGGCTGCTGGGCTGGCGATGCCACTGATCATCTTGTTATTCGGAAATCTCGTCAATTTCTTCGGCTCTGCTACGCAAGGCAACCTCGTACATGAGGTCTCTAAGGCTGCTTTGCAAATTGTTTACGTGGCTCTGGGGGCTAGTGTTGCATCTTCACTACAGGTGTCATGTTGGACTGTGACCGGAGAGAGGCAAGCTGCACGGATTCGAACTTCATACATGAAAGCCTTAATCAGACAAGGTATTGACTTTTTTGATACGAAAGTAAATGATGGAGAAGAAATAGTAAGGTTGTCTCACGAGATCATATTCATTCAAGAATCTATGAGTGAAAAGCTTGGAATATTTATAAACCGTGTATCATTGTTCATCGGAAGCCTTGTTATAGCAACTCTAAAGGGATGGCAGTTGGCACTAGTCTTGTTGTCCTGTATTCCATTTATTGCCATATCTGCTTTTATTATGTCATTGATGGTATCTAAATTGTCAGCTCGAGCTCAGTTGCAATTTGCTAAAGCAGGATCTTTAGCAGAGGAAACCGTGGGATCAATTAGAACGGTTGTATCCTTCTCTGGGGAGAGCAGGGCCATTGAGAAATACAATAAAACCATAAAAAAGGCTTACATATCAGTAGTTCATCAAGGAGCTGCTACAGGATTGGGAAACGGTGTTTTCTTAATGATTATTTTTTCCACCTATGCTTTAGCATTTTGGTATGGTTCTGTATTGGTACTCAATAAAGGGTACAATGGAGGAGATGTAATCAATGTCATTCTGGCAATCTTGACTGGTTCATCGTCATTAAGTGAGCTTTTTCCATGTGTGAGTACATTTGTAGCAGGACAAGTTGCCGCCCACAAGATGTTTGAGATAATACATAGGAAACCAGTGATTGATGCTTACGAGATTACTGGTACTGTTTTGGAAGACATCAAGGGTGACATTGAACTGAGGAATGTTTACTTCAGATACCCTAGCAGGCCTGAACATATCATTTTTGATGGATTTTCATTGCATGTTCCGAGTGGCTTAACAATGGCTCTTGTTGGAGAAAGTGGTAGCGGCAAATCGACAATTATAAACTTGGTGGAGAGGTTTTATGATCCCCAAGCTGGTGAAGTGCTGATAGATGGCTTCAACCTGAAAAAGTTAAGGCTGAGTTGGATAAGGGAAAAGATAGGGCTTGTCAGCCAGGAACCTATCTTATTCACCACTACTATCAAAGATAACATTGCATATGGAAAGCAAGATGCTAGTGATGATGAAATCAGAAAGGCAGTTGAGCTAGCTCACGGGGCGAAGTTCATCAGTAGGATGCCTAATGGCATTGAGACTTTGGTGGGAGAGCATGGCATTCAACTTTCTGGTGGGCAGAAGCAGAGAATTGCCATTGCAAGGGTGATTCTTAAGAACCCAAAAATTTTACTATTGGATGAGGCAACTAGTGCATTGGATGCAGAGTCTGAAAGTCTCATTCATGATGCTTTGTTGAACATTATGGTTGATAAAACTACGATCATTATTGCCCATCGTTTGTCTACTGTGAAGAAGGCTGACACCATTACAGTTATGCAAGGTGGGAGGGTTGTAGCACAAGGTTCTCACTCAGAGTTGGTTGAGAATCCAAGTGGGACTTATTCGCAGCTACTACGCCTACAGGGTTTGACCAAAACTGATGAAGAAGAATCACTTTCAAGCACTATTTCTGATATATCTGCAAGAAGTACTGATGATTCTGTTGTATTTGATTCTGAAGACTGTAGCCCCTTTAGGTCTTTTCTTCTGCTAGAATCCATTCCGGTGGAGCATCTAAAAATAAAGGAATCTAAGAAAGCAGAGCACTCAGAAGATGCATATATTAAGAAACTGAAACAAGTTCCTATATCTCGGCTGATTTACTTGAACAAATCAGAGATCGCAATACTCCTGGCAGGATCTGTTTGCGCTGCTGTAAATGGAGCCATTTTCCCAGTATTTGGAATCTTACTCTCAAATTCTATCAAGACATACTACGAACTGCCTCATCAACTTAAAAGTGATTCTAGGTTCTTGATATTGTTGGTTGCATTGTTAGCTATTGCAGGATTCATTTTTGTGCCTTTGCAGTACTACTGGTTTGGAGTTTCTGGTGGGAGGCTCATACAGCGTATCTGTTCAATATTGTTTGAGAGAATGCTGCATCAAGAGATCAGCTGGTTTGATGAACCTGCAAATTCCAGTGGCGCAATAGGTGCAAGGCTATCTTTAGATGTGACTTCGTTGCAATACCTTGTTGGTGGCACATTATCTTTGATGGTTCAGAACTCATCCACAGTGATTTCAGGACTTACATTAGCATTTGTGTCCAACTGGAAGTTATCATTTGTATTATTGGCAAGTTTACCTCTGATTGGGCTGCAAGCATATGCTCACATGAAGGTTTTCAATGGATATGGTGTTCAAGCTAAGAGTCTGTATATGGAAGCAACGCAGATGGCAAGTGACTCGATTTCTGGCATTCGTACCGTTGTTTCTTTTTGTGCAGAAGAGAAGGTGGTGAATGCTTACCATAATAAATGCAAACTGTCTATGAGACATGGTATTCATAAAGGAATTATTAGTGGATTTGTTTATGGCTTCACCATATTGGTTCTCCACTGTGCATATGCTTTTTGTTTCTACATTGGAGCTCATCTTGTACAGAATGGAACTGCTACTTATGTTCAATTTTTTATGGTATTCTTTGCTTTAAGAATGACCGCTATAGTGGTATCAAACACAAGCGCACTGGCGCCGGATACAGCCAAAGCTAGAGAAGCGGCTGCATCTGTCTTTGCTATTATTGACCGAAAATCCATGATTGATGCCAGCATAGAGAACGGCATTATATTGTCCAATTTTAGGGGAGAGATTGAGTTCCAACATGTTAGCTTCAATTATCCAAGCCGTCCCCAAGTTAGAATCTTCACAGATTTGAGCTTCAAAATGACATCTGGAAAAACTGTTGCGCTTGTTGGTGAAAGTGGCAGTGGAAAATCCACCGTGATCTCCCTAATTGAACGATTCTATGACTCTGATTCAGGGACTATACTCTTAGATGGAGTGGAAATCCAGAGTCTAAAGCTCAGTTGGCTTAGGCAGCAAATGGGACTGGTGAGCCAAGAGCCTGCATTGTTTAACGGCTCGATACGATCCAACATTGCATTCGGGAAGCAAGGTGATGCTTCGGAGGATGAGATCATTGCAGTCGCTGAGGCAGCCAATGCTCACAATTTTATATCGTCGCTTCCCAGTGGCTATGACACCAATGTTGGGGAGAGAGGCCTTCAGCTATCAGGCGGACAGAAGCAGCGCATTGCCATTGCTAGGGCTCTGATCAGGAATCCAAAGGTCCTTCTTCTTGATGAGGCAACAAGCGCACTGGATGCTGAATCAGAGCATATCGTGCAAGATGCTTTAGATCGAGCTATGTTGGGAAGGACGACTATTTGTATTGCTCATTGCCTCTCTACAATTCAGTTTGCTGATTCTATTCTTGTTCTTAAAAACGGAGTAATTGTTGAGAATGGGAAGCATGAAAGACTAATGAAAGTTTCAGGTGGAGCTTATGCAGCTCTCGTTTCTCTTCATATGGCATAATGATCTGAAGATTCTTCTGGCGGACAAAGAGGTTCTCTTCCAAGTTATTGAATTTAACCATGATAGTTATTATTGTCTTATTCTGTCATTTATGTTCTTTAATTCTAACATAGTATACAATTTTCTAATAGACAATGAAATGCATTCTATCCTTGTTAGAACTATGATTCAGTTGTAGTATCATATTAGCAATGTATAGATGCATATATATTTAGATGCAGATGGACGTTGGCGGCAGGCTCCCCCGCAAAGTTCTACGAAAGAAATCCATCATAGCGATCTTATGATCTTCACATGACGTCTCATTCCCCCTTAGTTACGCTTTTGAATAAATGTTGGGTTATTATACTAATTCAATATTGGATGCTAATTTCATAGGATCTAAATTCAATTCTTTGCACATTTTATATGTTGATCAGTGTGTAAGGCTTAGAGTTGTGGAATTGGCATTGTTTATTTTGATATCATGATAACAAAAATATTTCTATTTCAC

Network for GWHGAAEX014558

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.22	ABC_membrane	26	295	4.60E-51
PF00005.26	ABC_tran	364	512	1.00E-32
PF00664.22	ABC_membrane	674	943	7.80E-53
PF00005.26	ABC_tran	1013	1162	5.10E-35

Protein Sequence

>GWHPAAEX014558
MEVEKVAFYKLFIFADKYDVALMAVGSVSAAAAGLAMPLIILLFGNLVNFFGSATQGNLVHEVSKAALQIVYVALGASVASSLQVSCWTVTGERQAARIRTSYMKALIRQGIDFFDTKVNDGEEIVRLSHEIIFIQESMSEKLGIFINRVSLFIGSLVIATLKGWQLALVLLSCIPFIAISAFIMSLMVSKLSARAQLQFAKAGSLAEETVGSIRTVVSFSGESRAIEKYNKTIKKAYISVVHQGAATGLGNGVFLMIIFSTYALAFWYGSVLVLNKGYNGGDVINVILAILTGSSSLSELFPCVSTFVAGQVAAHKMFEIIHRKPVIDAYEITGTVLEDIKGDIELRNVYFRYPSRPEHIIFDGFSLHVPSGLTMALVGESGSGKSTIINLVERFYDPQAGEVLIDGFNLKKLRLSWIREKIGLVSQEPILFTTTIKDNIAYGKQDASDDEIRKAVELAHGAKFISRMPNGIETLVGEHGIQLSGGQKQRIAIARVILKNPKILLLDEATSALDAESESLIHDALLNIMVDKTTIIIAHRLSTVKKADTITVMQGGRVVAQGSHSELVENPSGTYSQLLRLQGLTKTDEEESLSSTISDISARSTDDSVVFDSEDCSPFRSFLLLESIPVEHLKIKESKKAEHSEDAYIKKLKQVPISRLIYLNKSEIAILLAGSVCAAVNGAIFPVFGILLSNSIKTYYELPHQLKSDSRFLILLVALLAIAGFIFVPLQYYWFGVSGGRLIQRICSILFERMLHQEISWFDEPANSSGAIGARLSLDVTSLQYLVGGTLSLMVQNSSTVISGLTLAFVSNWKLSFVLLASLPLIGLQAYAHMKVFNGYGVQAKSLYMEATQMASDSISGIRTVVSFCAEEKVVNAYHNKCKLSMRHGIHKGIISGFVYGFTILVLHCAYAFCFYIGAHLVQNGTATYVQFFMVFFALRMTAIVVSNTSALAPDTAKAREAAASVFAIIDRKSMIDASIENGIILSNFRGEIEFQHVSFNYPSRPQVRIFTDLSFKMTSGKTVALVGESGSGKSTVISLIERFYDSDSGTILLDGVEIQSLKLSWLRQQMGLVSQEPALFNGSIRSNIAFGKQGDASEDEIIAVAEAANAHNFISSLPSGYDTNVGERGLQLSGGQKQRIAIARALIRNPKVLLLDEATSALDAESEHIVQDALDRAMLGRTTICIAHCLSTIQFADSILVLKNGVIVENGKHERLMKVSGGAYAALVSLHMA

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05658	ABCB1, CD243	ABC transporters	map02010
K05658	ABCB1, CD243	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0042626	Molecular Function	ATPase activity, coupled to transmembrane movement of substances
GO:0005524	Molecular Function	ATP binding
GO:0016887	Molecular Function	ATPase activity
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.340
SRP064423	SRR2545915	Juvenile tuber	2.370
SRP108465	SRR5643513	five period of Gastrodia elata	8.300
	SRR5643514	five period of Gastrodia elata	32.570
	SRR5643515	five period of Gastrodia elata	24.630
	SRR5643524	five period of Gastrodia elata	44.790
	SRR5643525	five period of Gastrodia elata	4.500
	SRR5643528	five period of Gastrodia elata	8.930
	SRR5643658	five period of Gastrodia elata	3.730
	SRR5643659	five period of Gastrodia elata	3.500
	SRR5643660	five period of Gastrodia elata	3.190
	SRR5643661	five period of Gastrodia elata	3.210
	SRR5643662	five period of Gastrodia elata	2.650
	SRR5643663	five period of Gastrodia elata	2.400
	SRR5643664	five period of Gastrodia elata	2.190
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.220
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.720
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.470
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.130
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.780
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.170
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.100
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	34.960
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	31.540
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.160
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.160
SRP279888	Gastro	Gastrodia elata tuber	2.03
	Juven	Juvenile tuber	6.19
	Mother_Gastro	Mother tuber of Gastrodia elata	76.27
	Mother_Juven	Mother tuber of Juvenile	96.52