Detail information of GWHGAAEX014561/evm.TU.scaffold_6.111
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|332981630|ref|YP_004463071.1| | 5.00E-21 | ribonuclease III [Mahella australiensis 50-1 BON] |
| KOG | KOG0701 | 8.00E-99 | dsRNA-specific nuclease Dicer and related ribonucleases |
| nr | gi|695042840|ref|XP_009409090.1| | 4.10E-141 | PREDICTED: ribonuclease 3-like protein 2 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q6ATG6|RTL2_ORYSJ | 2.00E-109 | Ribonuclease 3-like protein 2 |
| trEMBL | tr|M0TGK0|M0TGK0_MUSAM | 9.00E-141 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P11120_001} |
| TAIR | AT3G20420 | 8.00E-99 | RNAse THREE-like protein 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000003 | 7680326 | 7699100 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014561
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00636.25 | Ribonuclease_3 | 90 | 203 | 1.70E-19 |
| PF00035.25 | dsrm | 231 | 291 | 1.10E-06 |
| PF14709.6 | DND1_DSRM | 341 | 411 | 2.10E-13 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006396 | Biological Process | RNA processing |
| GO:0004525 | Molecular Function | ribonuclease III activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.820 |
| SRR2545915 | Juvenile tuber | 9.890 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.330 |
| SRR5643514 | five period of Gastrodia elata | 11.790 | |
| SRR5643515 | five period of Gastrodia elata | 11.650 | |
| SRR5643524 | five period of Gastrodia elata | 10.710 | |
| SRR5643525 | five period of Gastrodia elata | 15.280 | |
| SRR5643528 | five period of Gastrodia elata | 13.380 | |
| SRR5643658 | five period of Gastrodia elata | 12.510 | |
| SRR5643659 | five period of Gastrodia elata | 11.380 | |
| SRR5643660 | five period of Gastrodia elata | 13.700 | |
| SRR5643661 | five period of Gastrodia elata | 14.580 | |
| SRR5643662 | five period of Gastrodia elata | 14.000 | |
| SRR5643663 | five period of Gastrodia elata | 13.260 | |
| SRR5643664 | five period of Gastrodia elata | 13.880 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.870 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.350 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.030 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.410 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.290 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.570 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.980 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.480 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.740 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.600 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.600 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 18.17 |
| Juven | Juvenile tuber | 17.44 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 24.78 | |
| Mother_Juven | Mother tuber of Juvenile | 19.99 |