Gene detail

Detail information of GWHGAAEX014562/evm.TU.scaffold_6.112

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|389879309\|ref\|YP_006372874.1\|	0	GTP-binding protein TypA/BipA [Tistrella mobilis KA081020-065]
KOG	KOG0462	0	Elongation factor-type GTP-binding protein
nr	gi\|743795171\|ref\|XP_010924386.1\|	0	PREDICTED: translation factor GUF1 homolog, organellar chromatophore [Elaeis guineensis]
Swissprot	tr\|Q9FNM5\|GUFP_ARATH	1.00E-37	Translation factor GUF1 homolog, chloroplastic {ECO:0000255\|HAMAP-Rule:MF_03138} (Precursor)
trEMBL	tr\|M0TU19\|M0TU19_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P27160_001}
TAIR	AT2G31060	0	elongation factor family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000003	7865853	7937449	+

Transcript Sequence
>GWHTAAEX014562 GGAATGTAAAACTGCTATAATAGCGGCAGCGCCAACCCAACTTTCTCCTGCGTGCTCAAGTTCTTTTAGTCTGGCATCGCCGTCAATAGGAGCAGGAAAACAATGGCGTGCCTGCTACTCCGCGGCCTGCGGTCCGCGGGGCGGTGCGGCTTCCCCTTCCATTCCACCTCTTCTTCTTCCGCCCTTCCATTCCATCGCAGTCACTTTCCCTCCCCTTCACTTCTGCGTCACTATTCCGCTGCTTCGGCCTCACCTTCGTTTGCTGCAGCCGCTATCGACGCCGCTGGGACCTCACTTGATCCCAGCCGTCTGAGGAACGTCGCGGTCATAGCACACGTCGATCACGGCAAGACAACCCTCATGGACCGATTGCTCCGCCAGTGCGGCGCCGACATTCCCCACGAACGTGCCATGGACTCCATCAGTTTAGAACGCGAGCGGGGCATCACTATTGCTTCTAAGGTTACTGCGATATCATGGAATGACATAGAACTCAACATGGTTGACACTCCCGGGCATGCTGATTTTGGTGGGGAAGTTGAACGAGTTGTTGGGATGGTTGAAGGCGCTGTGTTAGTTGTTGATGCCGGGGAGGGCCCACTTGCACAAACAAAATTTGTCCTTGCAAAAGCTTTAAAATTTGGATTACGTCCTATTCTTCTTTTGAACAAAGTTGATCGACCCTCAGTTTCTGAGGAGACTTGCAATGAAGTTGAGAGCTTGGTATTTGATCTATTTGCAAATCTTGGTGCTACAGAGGAACAACTGGAATTTCCTGTTCTTTATGCTTCTGCAAAAGAGGGATGGGCCTCTTTGACATATACTAAAACGCCTGCTGATGATGCTAGAAATATGTCAACTTTGCTGGATACCATTGTACATCATGTCCCTTCTCCATCAGCACGTTTGGATGCACCTTTCCAAATGCTGGTCTCAATGATGGAGCGTGATTTTTATATGGGCAGAATATTAACCGGGCGTGTATCCTCTGGAATAATACATGTGGGAGATAGAATCCATGGGCTTCGAAACACTAGCGGTGGAGTTGAGAAAATTGAAGATGGCAAGGTAACAAAAATTATGAAAAAGAAGGGAACAAATGTTGTTCCCATTGACACTGCTGGGGCTGGTGATATAATTTCTGTTGCCGGTCTTGCAAATCCATCAATTGGCCACACAGTGGCAAATGTTGAGGTGATGACAACATTGCCAACTGTCGAGTTAGATCCGCCGACTATTTCCATGACTTTTGGCGTCAATGATTCTCCCTTAGCTGGTCATGATGGGACTCATTTAACTGGAGGAAAAATAGGTAACCGCCTATTGGCAGAAGCTGAAACAAATCTTGCTATAAATGTTATTCCTGGTCCATCTGAATCTTTTGAAGTTCAAGGGCGAGGGGAACTGCAGTTAGGTATTTTAATTGAAAACATGAGGCGTGAGGGATTTGAGCTGTCTGTTTCGCCTCCAAGGGTTATGTATAAAACTGAAAACGGTGAAAAGCTAGAACCTATAGAGGAAGTGACAATTGAGGTTAATGAAGAGCATGTTGGCCTTGTTATGGAAGCCCTATCACATAGGAGAGGTGAGGTTGTTGATATGGGTCCTGTTCCAGGGAATGCTGGCAGGACCAGATTGTCACTTACATGCCCATCTAGGGGTCTAGTTGGATATAAAAGTGTGTTCAGCTCTGATACTCGTGGAAGTGGATTCATGCATCGAGCTTTTTTAACCTATTCAAAGTACAAGGGGCAACTTGGAAATGTAAGGAAAGGTGTATTGGTATCAGTCGGTAATGGGTTTATCACTGCACATGCTCTCATGAGTTTGGAGGCTCGTGGCACTCTCTTTGTGTCCCCTGGAATGGAGGCTTACGAAGGGATGATAGTTGGTGAGCATTCACGTGATACTGATCTTGATGTTAATCCTGTAAGAACAAAAGAACTTACTAACATTAGAGCTCCTGGAAAAGATGAAAATGTTCGTTTATCCCCACCTCGCCTGTTGACTTTGGAGGAAACTATTGGGTATGTGGCCTCTGATGAGCTCATTGAGGTTACCCCTAAGGTTATACGGCTAAGAAAAAGATACCTGGACGCCAATAAAAGAAAGATGATGAGAAATAAGCCTAAAGATTGACATAGTTATTGTTCTTCTTCTTCCCCAAGCTTTTTATTTGTTATTGTTTTAAGGTTTTATTCAAAAAAAATTTTGGCATGTTGTGAAAAACCAGTAATTAATAGTTTATTTGTAAAATAAAAGGA

Network for GWHGAAEX014562

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00009.26	GTP_EFTU	69	264	4.90E-51
PF00679.23	EFG_C	467	552	1.40E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003924	Molecular Function	GTPase activity
GO:0005525	Molecular Function	GTP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	36.770
SRP064423	SRR2545915	Juvenile tuber	42.640
SRP108465	SRR5643513	five period of Gastrodia elata	43.790
	SRR5643514	five period of Gastrodia elata	51.740
	SRR5643515	five period of Gastrodia elata	44.800
	SRR5643524	five period of Gastrodia elata	51.900
	SRR5643525	five period of Gastrodia elata	34.780
	SRR5643528	five period of Gastrodia elata	43.950
	SRR5643658	five period of Gastrodia elata	31.360
	SRR5643659	five period of Gastrodia elata	47.450
	SRR5643660	five period of Gastrodia elata	52.530
	SRR5643661	five period of Gastrodia elata	47.790
	SRR5643662	five period of Gastrodia elata	42.800
	SRR5643663	five period of Gastrodia elata	42.890
	SRR5643664	five period of Gastrodia elata	42.500
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	50.430
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	62.620
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	58.370
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	46.120
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	48.930
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	50.120
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	54.440
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	45.380
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	60.890
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	62.160
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	68.620
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	68.620
SRP279888	Gastro	Gastrodia elata tuber	71.20
	Juven	Juvenile tuber	78.87
	Mother_Gastro	Mother tuber of Gastrodia elata	34.05
	Mother_Juven	Mother tuber of Juvenile	70.48