Detail information of GWHGAAEX014572/evm.TU.scaffold_6.124
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428771548|ref|YP_007163338.1| | 3.00E-41 | long-chain-fatty-acid--CoA ligase [Cyanobacterium aponinum PCC 10605] |
| KOG | KOG1176 | 6.00E-62 | Acyl-CoA synthetase |
| nr | gi|672138623|ref|XP_008793072.1| | 1.23E-96 | PREDICTED: malonate--CoA ligase-like isoform X4 [Phoenix dactylifera] |
| Swissprot | tr|Q8H151|AAE13_ARATH | 2.00E-83 | Malonate--CoA ligase |
| trEMBL | tr|M0S6G1|M0S6G1_MUSAM | 4.00E-96 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P09200_001} |
| TAIR | AT3G16170 | 6.00E-62 | AMP-dependent synthetase and ligase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000003 | 8294656 | 8315040 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014572
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00501.27 | AMP-binding | 11 | 188 | 1.30E-29 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K18660 | ACSF3 | Metabolic pathways | map01100 |
| Fatty acid metabolism | map01212 | ||
| Fatty acid biosynthesis | map00061 | ||
| Cysteine and methionine metabolism | map00270 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 29.080 |
| SRR2545915 | Juvenile tuber | 33.170 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 25.900 |
| SRR5643514 | five period of Gastrodia elata | 25.710 | |
| SRR5643515 | five period of Gastrodia elata | 22.120 | |
| SRR5643524 | five period of Gastrodia elata | 26.860 | |
| SRR5643525 | five period of Gastrodia elata | 29.050 | |
| SRR5643528 | five period of Gastrodia elata | 40.050 | |
| SRR5643658 | five period of Gastrodia elata | 31.520 | |
| SRR5643659 | five period of Gastrodia elata | 18.330 | |
| SRR5643660 | five period of Gastrodia elata | 19.610 | |
| SRR5643661 | five period of Gastrodia elata | 17.960 | |
| SRR5643662 | five period of Gastrodia elata | 19.630 | |
| SRR5643663 | five period of Gastrodia elata | 15.620 | |
| SRR5643664 | five period of Gastrodia elata | 23.070 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 31.140 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 36.150 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 43.360 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 34.420 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 33.020 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 35.950 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 32.550 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 32.830 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 40.300 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 39.090 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 42.960 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 42.960 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 21.71 |
| Juven | Juvenile tuber | 18.72 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 72.38 | |
| Mother_Juven | Mother tuber of Juvenile | 55.16 |