Detail information of GWHGAAEX014573/evm.TU.scaffold_6.125
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|379730939|ref|YP_005323135.1| | 5.00E-25 | AMP-dependent synthetase and ligase [Saprospira grandis str. Lewin] |
| KOG | KOG1176 | 9.00E-71 | Acyl-CoA synthetase |
| nr | gi|743795825|ref|XP_010924575.1| | 1.21E-90 | PREDICTED: malonate--CoA ligase-like [Elaeis guineensis] |
| Swissprot | tr|Q8H151|AAE13_ARATH | 2.00E-72 | Malonate--CoA ligase |
| trEMBL | tr|A0A096TWZ4|A0A096TWZ4_MAIZE | 2.00E-89 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM2G460078_P03} |
| TAIR | AT3G16170 | 9.00E-71 | AMP-dependent synthetase and ligase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000003 | 8315207 | 8335891 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014573
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00501.27 | AMP-binding | 112 | 281 | 1.10E-34 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K18660 | ACSF3 | Metabolic pathways | map01100 |
| Fatty acid metabolism | map01212 | ||
| Fatty acid biosynthesis | map00061 | ||
| Cysteine and methionine metabolism | map00270 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 56.150 |
| SRR2545915 | Juvenile tuber | 62.080 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 31.000 |
| SRR5643514 | five period of Gastrodia elata | 37.850 | |
| SRR5643515 | five period of Gastrodia elata | 31.920 | |
| SRR5643524 | five period of Gastrodia elata | 31.820 | |
| SRR5643525 | five period of Gastrodia elata | 33.770 | |
| SRR5643528 | five period of Gastrodia elata | 44.520 | |
| SRR5643658 | five period of Gastrodia elata | 33.800 | |
| SRR5643659 | five period of Gastrodia elata | 21.860 | |
| SRR5643660 | five period of Gastrodia elata | 28.570 | |
| SRR5643661 | five period of Gastrodia elata | 21.120 | |
| SRR5643662 | five period of Gastrodia elata | 19.920 | |
| SRR5643663 | five period of Gastrodia elata | 21.700 | |
| SRR5643664 | five period of Gastrodia elata | 21.660 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 38.230 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 52.650 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 50.830 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 42.750 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 40.800 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 43.580 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 42.820 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 43.920 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 46.180 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 44.340 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 53.650 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 53.650 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 25.79 |
| Juven | Juvenile tuber | 24.46 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 65.93 | |
| Mother_Juven | Mother tuber of Juvenile | 76.90 |