Detail information of GWHGAAEX014575/evm.TU.scaffold_6.126
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|119944129|ref|YP_941809.1| | 5.00E-53 | ribokinase [Psychromonas ingrahamii 37] |
| KOG | KOG2855 | 4.00E-151 | Ribokinase |
| nr | gi|695079993|ref|XP_009387433.1| | 4.30E-158 | PREDICTED: ribokinase {ECO:0000312|EMBL:AAH23339.1} [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|O82616|SCRK5_ARATH | 3.00E-15 | Probable fructokinase-5 |
| trEMBL | tr|M5WH64|M5WH64_PRUPE | 2.00E-157 | Uncharacterized protein {ECO:0000313|EMBL:EMJ12621.1} |
| TAIR | AT1G17160 | 4.00E-151 | pfkB-like carbohydrate kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000003 | 8493426 | 8507041 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014575
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00294.23 | PfkB | 58 | 352 | 9.00E-64 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00852 | rbsK, RBKS | Metabolic pathways | map01100 |
| Pentose phosphate pathway | map00030 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006014 | Biological Process | D-ribose metabolic process |
| GO:0016773 | Molecular Function | phosphotransferase activity, alcohol group as acceptor |
| GO:0016301 | Molecular Function | kinase activity |
| GO:0004747 | Molecular Function | ribokinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.940 |
| SRR2545915 | Juvenile tuber | 5.990 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 14.040 |
| SRR5643514 | five period of Gastrodia elata | 15.630 | |
| SRR5643515 | five period of Gastrodia elata | 15.370 | |
| SRR5643524 | five period of Gastrodia elata | 17.310 | |
| SRR5643525 | five period of Gastrodia elata | 11.680 | |
| SRR5643528 | five period of Gastrodia elata | 12.750 | |
| SRR5643658 | five period of Gastrodia elata | 12.140 | |
| SRR5643659 | five period of Gastrodia elata | 13.880 | |
| SRR5643660 | five period of Gastrodia elata | 12.660 | |
| SRR5643661 | five period of Gastrodia elata | 16.340 | |
| SRR5643662 | five period of Gastrodia elata | 14.050 | |
| SRR5643663 | five period of Gastrodia elata | 13.860 | |
| SRR5643664 | five period of Gastrodia elata | 11.500 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.230 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.570 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.210 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.570 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.150 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.060 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.970 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.900 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.940 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.270 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.480 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.480 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.52 |
| Juven | Juvenile tuber | 25.79 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 20.37 | |
| Mother_Juven | Mother tuber of Juvenile | 35.29 |