Gene detail

Detail information of GWHGAAEX014578/evm.TU.scaffold_6.131

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|427724241\|ref\|YP_007071518.1\|	2.00E-121	solanesyl diphosphate synthase [Leptolyngbya sp. PCC 7376]
KOG	KOG0776	4.00E-173	Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase
nr	gi\|743758416\|ref\|XP_010926643.1\|	0	PREDICTED: probable solanesyl-diphosphate synthase 3, chloroplastic [Elaeis guineensis]
Swissprot	tr\|Q0INZ4\|SPS3_ORYSJ	0	Probable solanesyl-diphosphate synthase 3, chloroplastic (Precursor; Fragment)
trEMBL	tr\|B8AZL8\|B8AZL8_ORYSI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:EEC78778.1}
TAIR	AT1G17050	4.00E-173	solanesyl diphosphate synthase 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000003	8896177	8930891	-

Transcript Sequence
>GWHTAAEX014578 GCAATACTCAAAATAAATTGAATTAATCTCATAATATTTACGTATAAATTATCATATTATTCTCATTTTACGATAAAATCTCATAATATTTAACTAAGAAATAAAAAATAATTTTTATACGTTTATTTTTAAGCCACGTGGTGAAGATGTCTGTGCTGTCCTCATTTGTGAACGATCTTCTTCTCGCCAATCTCAAATCTCAAATCCCCAATCTTCCGTCTGATATTCTTGCCGTCCATTCTCTAAACCCATTTGAGAGCGAGTTTTAGCGGCAAAGCCCCGATATCTTACCGATTTCCATTCCATTGTGATGATTCTGAACGGTTCCTAACTTGTCCGAAGCTGATCAGCTATTTGTTCTTTCGATTGAGTTTGTAGAATGATGTGTTCTCTGACTTCTCTCCATTTGAATCTTAGCATAAAGGGGTTAGTTGCGTCAGGCTTTCCGAAAAGGAGCTGCCAGAGATGCGGTGGAAGTGCTCGATGCAATGCCTCATCGACGCAGAACGCTGGTGTTGTGAGCTCGGGATCGGCTGCCACTTCGCTGATTCCTAGTGTAGGCAGGAACTCCGATTCCATGTCTGATCTGCTTGAAGTAATTGCCGATGATCTAAAGAGCCTCAAAAAGAATTTCAAATCAATTATTGGTGCAGAAAATCCTGTTTTGATATCTGCAGCAGAACAGATAATTGATGCTGGAGGAAAGAGGCTGAGACCTGCTTTAGTATTCCTAGCATCAAGAGCTACTGCCGAACTAGCAGGGTTGAAGGAACTAACGGCACATCACCAACGTTTAGCAGAAATAATTGAAATGATTCATACAGCAAGTTTGATACATGATGATGTACTAGATGATAGTGGGATTCGAAGAGGAAAGAAAACAATTCACCAAATATATGGGACCCGTGTTGCAGTCCTAGCTGGAGATTTCATGTTCGCCCAGTCATCATGGCATCTAGCCAATCTTGAGAGTCTTGAAGTCATCAAACTCATCAGTCAAGTCATCAAGGATTTTGCTTGCGGAGAAATAAAGCAGATCTCAGGTTTCTTCAATTGTGCTCTCACACTTGAAGACTATCTTCTCAAAAGCTACTACAAGACTGCATCTCTGATTGCGGCAAGCACAAAATCTGCCGCCATATTCAGTGAAGTCAGCAGCAGCATCTGTGAGCAGATGTATGAATATGGGAAGAACCTGGGCCTGTCCTTCCAGATTGTGGACGACATCCTGGATTTCACCCAGTCATCAGAGCAGCTTGGAAAGCCAGCAGGCAGTGACCTTGCGAAGGGTAACCTTACTGCTCCTGTCATTTTTGCTTTAGAAAAAGATTCCAAACTTAGAGAGATTATTGCTTCTCAATTTATTAAGGAAGGCTCCTTAGAAACTGCTATAGAGTTGGTCCTTAAATCTGAGGGGATAAAAAGAGCAGAGGCTCTTGCCAATGAGAAGGCTGAATTAGCCATTCAAAGCCTTAGTTGCCTTCCAAAGGGTCATTACAAAACTTCCTTGGCTGGAATAGTAAAGTACAATCTTCAAAGAATTGATTAGACACATACTACCATTAAGACGTCTATTGAAATTCTAATTGTAAAGCTGATAAACAAAGAAATAGCATATTTTGTCTCTATGTCAGAGTGTATGAAGCCCAATGCATTTGCACAGATTTTTTAGTGTTGCAGGAGTTTCCTTAGAATTATTTTCTTATTATAGAATTCTGAAGAAGGAAAAGTTACAGGCTTTATTAGCACAGTTAAAGTAGTTTCCATTAGTGACAGTTCTGGTTTCAAAGGACTGCCTGTTCCCAGCATTAGAGAAGGTGTAAACAAAATATTATGGACTTGAAGTGCTTGCTATGGGAGTTCTGTATGGCTGTGGCAAATGGAATCTAGAGATGCTGTTGCTGATGGTATTGCATAAAAATTGGAATTGGTCCTTAAGGGTGCAGATTGGAATGATCTGGAATTAAAATATGATTGGAGGTCTATTTGGGACAGTCCTTATAGCTTCATGCCATAATAAGAAAATATTGTTTGCTTTAGCTCCATCTTATGTGATATTAGGCTGAACTTCACAGCTTTCCTTTTGTACATTAGCTTTCAAGTCATTTGTCTTGGGATTGCTTTTTACAAAGAAAGAAAGAGGCTATTAAACTAGCAATTTCAATGAAAATAAAATAAAAAGTTCTAAATTAGAACACATGATTAAGAGGCATAAGATGACATCTAGGTTAGATTTGCAATTTTATTAGTCATCTAATTTCTAATGTTTGTGGTCTGTTGAGGTATTATTTGAATGCAAGAGTAGATAATGCCCAACGCGTTGGGCAACGGTGCTCAAAGCTCTGGATTTTCCTCTTTTTACGAATAAAAAGTACATCACAG

Network for GWHGAAEX014578

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module3

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00348.16	polyprenyl_synt	96	340	2.80E-74

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05356	SPS, sds	Biosynthesis of secondary metabolites	map01110
K05356	SPS, sds	Terpenoid backbone biosynthesis	map00900

Gene Ontology

GO term	Ontology	Name
GO:0008299	Biological Process	isoprenoid biosynthetic process

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.810
SRP064423	SRR2545915	Juvenile tuber	3.560
SRP108465	SRR5643513	five period of Gastrodia elata	5.870
	SRR5643514	five period of Gastrodia elata	6.740
	SRR5643515	five period of Gastrodia elata	5.960
	SRR5643524	five period of Gastrodia elata	5.630
	SRR5643525	five period of Gastrodia elata	5.260
	SRR5643528	five period of Gastrodia elata	4.580
	SRR5643658	five period of Gastrodia elata	3.790
	SRR5643659	five period of Gastrodia elata	10.410
	SRR5643660	five period of Gastrodia elata	8.750
	SRR5643661	five period of Gastrodia elata	11.600
	SRR5643662	five period of Gastrodia elata	9.650
	SRR5643663	five period of Gastrodia elata	15.030
	SRR5643664	five period of Gastrodia elata	11.070
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.530
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.990
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.070
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.840
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.330
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.400
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.820
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.460
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.660
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.570
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.370
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.370
SRP279888	Gastro	Gastrodia elata tuber	8.58
	Juven	Juvenile tuber	6.10
	Mother_Gastro	Mother tuber of Gastrodia elata	4.09
	Mother_Juven	Mother tuber of Juvenile	3.46