Detail information of GWHGAAEX014586/evm.TU.scaffold_6.145


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG03043.00E-129mRNA deadenylase subunit
nrgi|695058275|ref|XP_009417447.1|2.87E-140PREDICTED: probable CCR4-associated factor 1 homolog 7 [Musa acuminata subsp. malaccensis]
Swissprottr|Q9SKZ2|CAF1G_ARATH3.00E-136Probable CCR4-associated factor 1 homolog 7
trEMBLtr|M0TZY5|M0TZY5_MUSAM1.00E-140Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P13270_001}
TAIRAT1G807803.00E-129Polynucleotidyl transferase, ribonuclease H-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000395371149539269+
Transcript Sequence

Network for GWHGAAEX014586

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04857.19CAF1211435.20E-09
PF04857.19CAF11662502.00E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12581CNOT7_8, CAF1, POP2 RNA degradation map03018

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms23.430
SRR2545915Juvenile tuber18.820
SRP108465SRR5643513five period of Gastrodia elata19.590
SRR5643514five period of Gastrodia elata12.560
SRR5643515five period of Gastrodia elata12.490
SRR5643524five period of Gastrodia elata10.810
SRR5643525five period of Gastrodia elata16.570
SRR5643528five period of Gastrodia elata11.380
SRR5643658five period of Gastrodia elata10.340
SRR5643659five period of Gastrodia elata27.660
SRR5643660five period of Gastrodia elata29.260
SRR5643661five period of Gastrodia elata24.520
SRR5643662five period of Gastrodia elata27.020
SRR5643663five period of Gastrodia elata23.030
SRR5643664five period of Gastrodia elata23.860
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_129.380
SRR6049655Rhizomagastrodiae_C368-T10_good_130.460
SRR6049656Rhizomagastrodiae_C368-T07_good_123.600
SRR6049657Rhizomagastrodiae_C368-T07_good_136.530
SRR6049658Rhizomagastrodiae_C368-T04_good_137.500
SRR6049659Rhizomagastrodiae_C368-T04_good_139.710
SRR6049660Rhizomagastrodiae_C368-T01_good_132.000
SRR6049661Rhizomagastrodiae_C368-T04_good_132.640
SRR6049662Rhizomagastrodiae_C368-T01_good_122.520
SRR6049663Rhizomagastrodiae_C368-T01_good_126.970
SRR6049664Rhizomagastrodiae_C368-T10_good_116.320
SRR6049665Rhizomagastrodiae_C368-T10_good_116.320
SRP279888GastroGastrodia elata tuber 30.95
JuvenJuvenile tuber30.45
Mother_GastroMother tuber of Gastrodia elata 31.33
Mother_JuvenMother tuber of Juvenile 25.93