Detail information of GWHGAAEX014596/evm.TU.scaffold_6.165


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|307152136|ref|YP_003887520.1|5.00E-0730S ribosomal protein S21 [Cyanothece sp. PCC 7822]
nrgi|743808714|ref|XP_010928402.1|1.04E-32PREDICTED: uncharacterized protein LOC105050179 [Elaeis guineensis]
Swissprottr|P82024|RR21_SPIOL2.00E-0630S ribosomal protein S21, chloroplastic (Fragment)
trEMBLtr|A0A068V7U8|A0A068V7U8_COFCA4.00E-32Coffea canephora
TAIRAT3G271607.00E-27Ribosomal protein S21 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000031071596510766152-
Transcript Sequence

Network for GWHGAAEX014596

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01165.19Ribosomal_S21901386.10E-13
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms16.910
SRR2545915Juvenile tuber27.260
SRP108465SRR5643513five period of Gastrodia elata38.840
SRR5643514five period of Gastrodia elata46.130
SRR5643515five period of Gastrodia elata44.900
SRR5643524five period of Gastrodia elata53.250
SRR5643525five period of Gastrodia elata22.020
SRR5643528five period of Gastrodia elata24.900
SRR5643658five period of Gastrodia elata25.560
SRR5643659five period of Gastrodia elata39.900
SRR5643660five period of Gastrodia elata45.790
SRR5643661five period of Gastrodia elata46.050
SRR5643662five period of Gastrodia elata50.730
SRR5643663five period of Gastrodia elata53.360
SRR5643664five period of Gastrodia elata45.560
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_126.660
SRR6049655Rhizomagastrodiae_C368-T10_good_139.210
SRR6049656Rhizomagastrodiae_C368-T07_good_127.490
SRR6049657Rhizomagastrodiae_C368-T07_good_130.510
SRR6049658Rhizomagastrodiae_C368-T04_good_124.870
SRR6049659Rhizomagastrodiae_C368-T04_good_122.400
SRR6049660Rhizomagastrodiae_C368-T01_good_125.500
SRR6049661Rhizomagastrodiae_C368-T04_good_122.570
SRR6049662Rhizomagastrodiae_C368-T01_good_127.310
SRR6049663Rhizomagastrodiae_C368-T01_good_126.720
SRR6049664Rhizomagastrodiae_C368-T10_good_135.710
SRR6049665Rhizomagastrodiae_C368-T10_good_135.710
SRP279888GastroGastrodia elata tuber 55.22
JuvenJuvenile tuber65.16
Mother_GastroMother tuber of Gastrodia elata 32.89
Mother_JuvenMother tuber of Juvenile 44.51