Detail information of GWHGAAEX014601/evm.TU.scaffold_6.178
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1795 | 0 | U5 snRNP spliceosome subunit |
| nr | gi|672143962|ref|XP_008795869.1| | 0 | PREDICTED: pre-mRNA-processing-splicing factor 8-like [Phoenix dactylifera] |
| trEMBL | tr|V4RZM0|V4RZM0_9ROSI | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESR40538.1} |
| TAIR | AT1G80070 | 0 | Pre-mRNA-processing-splicing factor |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000003 | 11573788 | 11592777 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014601
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08082.10 | PRO8NT | 81 | 232 | 6.20E-86 |
| PF08083.10 | PROCN | 421 | 826 | 6.70E-237 |
| PF10598.8 | RRM_4 | 1011 | 1101 | 6.10E-47 |
| PF10597.8 | U5_2-snRNA_bdg | 1236 | 1369 | 2.50E-72 |
| PF10596.8 | U6-snRNA_bdg | 1468 | 1626 | 1.40E-92 |
| PF12134.7 | PRP8_domainIV | 1786 | 2015 | 8.60E-130 |
| PF01398.20 | JAB | 2127 | 2224 | 8.60E-08 |
| PF08084.10 | PROCT | 2238 | 2358 | 2.40E-51 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12856 | PRPF8, PRP8 | Spliceosome | map03040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000398 | Biological Process | mRNA splicing, via spliceosome |
| GO:0030623 | Molecular Function | U5 snRNA binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0017070 | Molecular Function | U6 snRNA binding |
| GO:0003723 | Molecular Function | RNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 154.400 |
| SRR2545915 | Juvenile tuber | 106.510 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 39.420 |
| SRR5643514 | five period of Gastrodia elata | 41.910 | |
| SRR5643515 | five period of Gastrodia elata | 37.700 | |
| SRR5643524 | five period of Gastrodia elata | 41.260 | |
| SRR5643525 | five period of Gastrodia elata | 35.090 | |
| SRR5643528 | five period of Gastrodia elata | 27.340 | |
| SRR5643658 | five period of Gastrodia elata | 34.370 | |
| SRR5643659 | five period of Gastrodia elata | 49.460 | |
| SRR5643660 | five period of Gastrodia elata | 54.410 | |
| SRR5643661 | five period of Gastrodia elata | 50.610 | |
| SRR5643662 | five period of Gastrodia elata | 45.650 | |
| SRR5643663 | five period of Gastrodia elata | 51.890 | |
| SRR5643664 | five period of Gastrodia elata | 55.300 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 46.810 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 42.020 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 45.790 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 51.350 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 52.940 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 54.980 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 50.890 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 55.720 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 48.070 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 47.730 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 36.310 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 36.310 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 63.45 |
| Juven | Juvenile tuber | 72.25 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 36.85 | |
| Mother_Juven | Mother tuber of Juvenile | 65.90 |