Detail information of GWHGAAEX014602/evm.TU.scaffold_6.179
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1670 | 1.00E-92 | Translation initiation factor 4F, cap-binding subunit (eIF-4E) and related cap-binding proteins |
| nr | gi|743872521|ref|XP_010906573.1| | 2.58E-104 | PREDICTED: eukaryotic translation initiation factor 4E-1-like [Elaeis guineensis] |
| Swissprot | tr|O81481|IF4E1_MAIZE | 7.00E-97 | Eukaryotic translation initiation factor 4E-1 |
| trEMBL | tr|M0SNE7|M0SNE7_MUSAM | 1.00E-98 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P12820_001} |
| TAIR | AT4G18040 | 1.00E-92 | eukaryotic translation initiation factor 4E |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000003 | 11592948 | 11605657 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014602
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module5 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01652.17 | IF4E | 60 | 211 | 7.20E-52 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006413 | Biological Process | translational initiation |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0003743 | Molecular Function | translation initiation factor activity |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.250 |
| SRR2545915 | Juvenile tuber | 3.540 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.490 |
| SRR5643514 | five period of Gastrodia elata | 6.340 | |
| SRR5643515 | five period of Gastrodia elata | 6.200 | |
| SRR5643524 | five period of Gastrodia elata | 8.460 | |
| SRR5643525 | five period of Gastrodia elata | 2.140 | |
| SRR5643528 | five period of Gastrodia elata | 2.180 | |
| SRR5643658 | five period of Gastrodia elata | 1.710 | |
| SRR5643659 | five period of Gastrodia elata | 5.350 | |
| SRR5643660 | five period of Gastrodia elata | 5.210 | |
| SRR5643661 | five period of Gastrodia elata | 4.640 | |
| SRR5643662 | five period of Gastrodia elata | 2.490 | |
| SRR5643663 | five period of Gastrodia elata | 1.650 | |
| SRR5643664 | five period of Gastrodia elata | 3.570 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.400 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.740 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.060 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.970 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.080 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.640 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.490 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.830 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.990 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.860 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.180 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.180 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.49 |
| Juven | Juvenile tuber | 2.06 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.10 | |
| Mother_Juven | Mother tuber of Juvenile | 1.35 |