Detail information of GWHGAAEX014606/evm.TU.scaffold_6.189
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|110633523|ref|YP_673731.1| | 2.00E-134 | ATP-dependent protease ATP-binding subunit ClpX [Chelativorans sp. BNC1] |
| KOG | KOG0745 | 0 | Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) |
| nr | gi|743771332|ref|XP_010915955.1| | 0 | PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Elaeis guineensis] |
| trEMBL | tr|E0CV48|E0CV48_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI23009.3} |
| TAIR | AT5G53350 | 0 | CLP protease regulatory subunit X |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000003 | 12198095 | 12254597 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014606
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07724.13 | AAA_2 | 224 | 428 | 1.10E-43 |
| PF10431.8 | ClpB_D2-small | 435 | 505 | 6.00E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03544 | clpX, CLPX | Cell cycle - Caulobacter | map04112 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006457 | Biological Process | protein folding |
| GO:0051082 | Molecular Function | unfolded protein binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 42.360 |
| SRR2545915 | Juvenile tuber | 32.600 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 35.960 |
| SRR5643514 | five period of Gastrodia elata | 38.960 | |
| SRR5643515 | five period of Gastrodia elata | 34.770 | |
| SRR5643524 | five period of Gastrodia elata | 37.950 | |
| SRR5643525 | five period of Gastrodia elata | 35.580 | |
| SRR5643528 | five period of Gastrodia elata | 28.240 | |
| SRR5643658 | five period of Gastrodia elata | 32.580 | |
| SRR5643659 | five period of Gastrodia elata | 31.320 | |
| SRR5643660 | five period of Gastrodia elata | 35.930 | |
| SRR5643661 | five period of Gastrodia elata | 34.790 | |
| SRR5643662 | five period of Gastrodia elata | 32.180 | |
| SRR5643663 | five period of Gastrodia elata | 33.190 | |
| SRR5643664 | five period of Gastrodia elata | 32.920 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 31.800 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 25.200 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 25.350 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 32.590 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 34.500 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 35.500 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 32.540 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 30.170 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 34.060 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 31.600 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 31.340 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 31.340 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 29.94 |
| Juven | Juvenile tuber | 40.77 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 28.78 | |
| Mother_Juven | Mother tuber of Juvenile | 41.93 |