Detail information of GWHGAAEX014612/evm.TU.scaffold_6.199
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|339326706|ref|YP_004686399.1| | 2.00E-29 | dihydrofolate reductase FolA [Cupriavidus necator N-1] |
| KOG | KOG1324 | 1.00E-91 | Dihydrofolate reductase |
| nr | gi|743801296|ref|XP_010926323.1| | 2.28E-104 | PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase-like isoform X3 [Elaeis guineensis] |
| Swissprot | tr|O81395|DRTS_MAIZE | 3.00E-97 | Thymidylate synthase |
| trEMBL | tr|B8BKI9|B8BKI9_ORYSI | 2.00E-97 | Putative uncharacterized protein {ECO:0000313|EMBL:EEC68175.1} |
| TAIR | AT2G16370_1 | 1.00E-91 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000003 | 12592848 | 12615771 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014612
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00186.18 | DHFR_1 | 135 | 311 | 5.20E-40 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13998 | DHFR-TS | Metabolic pathways | map01100 |
| Pyrimidine metabolism | map00240 | ||
| Folate biosynthesis | map00790 | ||
| One carbon pool by folate | map00670 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0046654 | Biological Process | tetrahydrofolate biosynthetic process |
| GO:0004146 | Molecular Function | dihydrofolate reductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 53.020 |
| SRR2545915 | Juvenile tuber | 47.320 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 20.440 |
| SRR5643514 | five period of Gastrodia elata | 19.820 | |
| SRR5643515 | five period of Gastrodia elata | 21.900 | |
| SRR5643524 | five period of Gastrodia elata | 18.820 | |
| SRR5643525 | five period of Gastrodia elata | 35.650 | |
| SRR5643528 | five period of Gastrodia elata | 27.570 | |
| SRR5643658 | five period of Gastrodia elata | 31.900 | |
| SRR5643659 | five period of Gastrodia elata | 22.690 | |
| SRR5643660 | five period of Gastrodia elata | 25.310 | |
| SRR5643661 | five period of Gastrodia elata | 22.830 | |
| SRR5643662 | five period of Gastrodia elata | 32.210 | |
| SRR5643663 | five period of Gastrodia elata | 26.580 | |
| SRR5643664 | five period of Gastrodia elata | 32.620 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 28.370 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 27.090 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 21.820 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 35.700 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 33.750 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 49.160 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 32.920 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 38.270 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 17.620 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 20.500 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 19.940 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 19.940 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 26.60 |
| Juven | Juvenile tuber | 28.70 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 33.50 | |
| Mother_Juven | Mother tuber of Juvenile | 35.23 |