Detail information of GWHGAAEX014618/evm.TU.scaffold_60.6


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|284990776|ref|YP_003409330.1|3.00E-20cold-shock DNA-binding domain-containing protein [Geodermatophilus obscurus DSM 43160]
nrgi|672144773|ref|XP_008796289.1|3.19E-33PREDICTED: uncharacterized protein LOC103711787 [Phoenix dactylifera]
Swissprottr|P27484|GRP2_NICSY2.00E-19Glycine-rich protein 2
trEMBLtr|M0SQ79|M0SQ79_MUSAM5.00E-31Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P19160_001}
TAIRAT4G286902.00E-16Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000061185443200646+
Transcript Sequence

Network for GWHGAAEX014618

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00313.21CSD9741.30E-20
PF00313.21CSD1061717.10E-18
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyCSD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.450
SRR2545915Juvenile tuber11.990
SRP108465SRR5643513five period of Gastrodia elata3.690
SRR5643514five period of Gastrodia elata5.260
SRR5643515five period of Gastrodia elata2.860
SRR5643524five period of Gastrodia elata2.880
SRR5643525five period of Gastrodia elata3.400
SRR5643528five period of Gastrodia elata2.250
SRR5643658five period of Gastrodia elata2.700
SRR5643659five period of Gastrodia elata1.540
SRR5643660five period of Gastrodia elata0.930
SRR5643661five period of Gastrodia elata1.830
SRR5643662five period of Gastrodia elata0.370
SRR5643663five period of Gastrodia elata1.090
SRR5643664five period of Gastrodia elata1.090
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_111.920
SRR6049655Rhizomagastrodiae_C368-T10_good_19.240
SRR6049656Rhizomagastrodiae_C368-T07_good_112.190
SRR6049657Rhizomagastrodiae_C368-T07_good_110.530
SRR6049658Rhizomagastrodiae_C368-T04_good_111.990
SRR6049659Rhizomagastrodiae_C368-T04_good_115.670
SRR6049660Rhizomagastrodiae_C368-T01_good_111.220
SRR6049661Rhizomagastrodiae_C368-T04_good_116.140
SRR6049662Rhizomagastrodiae_C368-T01_good_118.410
SRR6049663Rhizomagastrodiae_C368-T01_good_118.660
SRR6049664Rhizomagastrodiae_C368-T10_good_113.720
SRR6049665Rhizomagastrodiae_C368-T10_good_113.720
SRP279888GastroGastrodia elata tuber 3.05
JuvenJuvenile tuber1.03
Mother_GastroMother tuber of Gastrodia elata 7.47
Mother_JuvenMother tuber of Juvenile 0.40