Gene detail

Detail information of GWHGAAEX014623/evm.TU.scaffold_60.14

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743826984\|ref\|XP_010933462.1\|	0	PREDICTED: transcription factor MYC4-like [Elaeis guineensis]
Swissprot	tr\|Q39204\|MYC2_ARATH	1.00E-169	Transcription factor MYC2
trEMBL	tr\|F6HT90\|F6HT90_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB57900.1}
TAIR	AT1G32640	4.00E-169	Basic helix-loop-helix (bHLH) DNA-binding family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000061	362094	364441	+

Transcript Sequence
>GWHTAAEX014623 CTGATTTAATGATTTTGCCTTAAAAATCACTAAATAAAATATATAAGATAAATTTTTTATTCTGAATAATTAAATGAGTAAGCATTTGTGCAAACAATGTTTGAAGGGAGGAAAGCTGAACACACTTTCCGATTTTTCGCATCAAATAAATAATAATAAGGCAAAAAAGAAAGAGAAACAAAAAAGAGCATTCCTTTCCGTGCGCAACTAACCAACCCCTTCGTCTCCCTCAGCCCCTCATCCATCACAGTACTCCCCCCAGCCTGCCTCCTCTTCCGCCGCCATCCCCGTCTTTATGCCCTTGCGATGAATCTCTGGACAGACGACAACGCATCAATGATGGAGGCATTCATGGCGGGTTCAGCAGACTTCCCCAGCCTCCCATGGAATCCGACGCCGGCGATCATGCCCTCCCCTGTGTATTTCACACAGGAGACTCTGCAGCAGAGGCTCCAGATGCTGATCGAGGGGGCAAGGGAGAGTTGGACCTACGCGATCTTCTGGCAGTCATCCATGGACGCCGGCTCTGGCGCAAGCCTCCTCGGATGGGGCGATGGGTACTACAAGGGCTGCGAGGAGGGAAAGCGGAAGCACAACTCCAAAACGCCCGCATCCGCGGCCGAGCAGGACCACCGCAAGCGCGTCCTCCGAGAACTCAACTCCCTGATCTCCAGCGGCACTTCTTCGTCCCCCGAAGACGCCGTCGACGAGGAAGTCACCGACACGGAGTGGTTCTTCCTCGTTTCCATGACGCAGTCCTTCGTCAACGGCAGCGGCCTTCCCGGGCACGCGAATCTTTCCGGCGCGCCTTCCTGGTTCTCCGGATCCGATCGCCTCGCGTTGGCGCCCTGCGAGCGGGCCAGGCAAGCCGAAGCGCTGGGCATTCAGACCGTCGTCTGCGTCCCCGTGGGCACCGGAGTCGTCGAGCTCGGATCCACTGATTTGATCTTCCAGAGCGCTGAGACGATGAGCAAGATCCGGCTACTGTTCCTCTTCAGCGACCACGATGCGAATCCCCCCGCAGTCTGGATCTCGGATCCTCCCGCAGCGGAGATCAAGGACTCGGTATCCAGCGGACTCACCGAAAGCCGGAACTCCGTCCAGATTCAGTCCCTCAATCTTCACCATCACCAGCAACCGCCCGATTTCACCCAGCAGCAGCCCTTCAAGCCGGAATCCGGCGACATCCTCAGCTTTGGGGAAAGCAAGAGGAGCAGGGGTCGCTCACCGCCGTTTGGAACTGCAGCGGCGACGTCCGAGGAGGGCATGCTCTCCTTCTCCTCGACTCCGACGGCGCCGCCGAAGGGGAAGCCGACGCCGTTGGCGAAGGCCGCGGATTCCGAGCAGTCGGACCTCGACGCTTCCGTCCGCGAGGCGGAGAGCAGCAGGGCAGCTGAGCCGGAGAAGCGGCCGAGGAAACGCGGCCGGAAGCCGGCCAACGGCCGGGAGGAGCCCCTCAACCACGTCGAGGCGGAGCGGATGCGGCGGGAGAAGCTCAACCAGAGGTTCTACGCCCTGCGCGCCGTCGTCCCCAACGTGTCCAAGATGGACAAAGCTTCCCTCCTGGGCGACGCCATCTCCTACATCAACGAGCTCAGGTCGAAGGTCCAGTCACTGGAGACCGACAACGAGGGGCTGGAGTCCCAGCTAGAGTCCCTCAAGCTGGAGCGCGCCGTCCCGCGGCCCCTCCCCCCGGCTGAGAGCTCCGGCGGTAGGAACGCCGGCGGGGAGATCGAGGTGAAGTTTCTCGGAGGGGAGGCGATGATCCGGGTGCAGTGCCAGCGGAAGAACCACCCTGCGGCGAGGCTGACGGCGGCGCTCAAGGACTTGGATCTGGAGCTTTGCTACGCCAGCGTCTCCGTCGTCAGGGAGCTTATGATCCTGCAGGCGACCGTCAGGATGCCCGGCCGCGGATACACGCAGGAGCAGCTCAGCTCCGTCCTATATTCCCGTGTTCTCGACCCGACCCTCCGCCATTGATTCCGCCCCCTAAGTTTTTATTCTTGTTTTCTTGAATCTCTCTGTATTATAAAATCGACTTCATCGTATCAACGTCTGCAGCCATATCAAGATCAACGAACGCTAAGCAGTTGCCTGTACTCTATTTTGCATAATCATGCGGACTGCAGAAGCATCTGAAATGCATTGAATCTCCATTTTTTCCGCGGCGATCGAGGAACATTGATCCGGTGGTAATTTTTTTCGGCTAAGCTTTTTGATTTGTTTATTGTATAGTATTAATAGCATTGTGCTAAAGTATTGATCAAGAAATTTTGACGAAGATGTTGATGCAAAATTGCGGTGAACAAATTTTTAATAAATTTTATTCTTTTAGTATTGAACATTAT

Network for GWHGAAEX014623

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14215.5	bHLH-MYC_N	45	228	2.80E-55
PF00010.25	HLH	385	430	1.00E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
K13422	MYC2	MAPK signaling pathway - plant	map04016
K13422	MYC2	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0046983	Molecular Function	protein dimerization activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	27.690
SRP064423	SRR2545915	Juvenile tuber	16.020
SRP108465	SRR5643513	five period of Gastrodia elata	39.560
	SRR5643514	five period of Gastrodia elata	37.140
	SRR5643515	five period of Gastrodia elata	55.810
	SRR5643524	five period of Gastrodia elata	38.550
	SRR5643525	five period of Gastrodia elata	55.870
	SRR5643528	five period of Gastrodia elata	56.950
	SRR5643658	five period of Gastrodia elata	34.440
	SRR5643659	five period of Gastrodia elata	48.710
	SRR5643660	five period of Gastrodia elata	21.030
	SRR5643661	five period of Gastrodia elata	29.940
	SRR5643662	five period of Gastrodia elata	34.580
	SRR5643663	five period of Gastrodia elata	20.490
	SRR5643664	five period of Gastrodia elata	43.490
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	62.370
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	55.270
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	55.970
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	64.190
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	75.240
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	91.080
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	84.120
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	69.390
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	67.440
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	99.800
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	57.320
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	57.320
SRP279888	Gastro	Gastrodia elata tuber	13.50
	Juven	Juvenile tuber	29.12
	Mother_Gastro	Mother tuber of Gastrodia elata	96.61
	Mother_Juven	Mother tuber of Juvenile	42.28