Detail information of GWHGAAEX014625/evm.TU.scaffold_60.17
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|340617136|ref|YP_004735589.1| | 1.00E-29 | Receptor-like protein kinase [Zobellia galactanivorans] |
| nr | gi|743888008|ref|XP_010910517.1| | 0 | PREDICTED: somatic embryogenesis receptor kinase 1-like [Elaeis guineensis] |
| Swissprot | tr|Q8RY65|NIK2_ARATH | 3.00E-62 | Protein NSP-INTERACTING KINASE 2 (Precursor) |
| trEMBL | tr|M0RNC2|M0RNC2_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P00910_001} |
| TAIR | AT5G51560 | 0 | Leucine-rich repeat protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000061 | 555833 | 559076 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014625
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 28 | 69 | 1.60E-08 |
| PF13855.5 | LRR_8 | 145 | 204 | 2.30E-11 |
| PF07714.16 | Pkinase_Tyr | 421 | 681 | 6.30E-29 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-IV |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.530 |
| SRR2545915 | Juvenile tuber | 10.570 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.590 |
| SRR5643514 | five period of Gastrodia elata | 5.040 | |
| SRR5643515 | five period of Gastrodia elata | 1.530 | |
| SRR5643524 | five period of Gastrodia elata | 3.370 | |
| SRR5643525 | five period of Gastrodia elata | 11.890 | |
| SRR5643528 | five period of Gastrodia elata | 6.810 | |
| SRR5643658 | five period of Gastrodia elata | 7.430 | |
| SRR5643659 | five period of Gastrodia elata | 1.710 | |
| SRR5643660 | five period of Gastrodia elata | 1.370 | |
| SRR5643661 | five period of Gastrodia elata | 0.900 | |
| SRR5643662 | five period of Gastrodia elata | 0.780 | |
| SRR5643663 | five period of Gastrodia elata | 1.470 | |
| SRR5643664 | five period of Gastrodia elata | 1.030 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.770 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.020 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.590 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.750 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.450 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.710 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.020 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.660 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 23.200 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.870 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.520 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.520 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.36 |
| Juven | Juvenile tuber | 4.09 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.91 | |
| Mother_Juven | Mother tuber of Juvenile | 1.14 |