Detail information of GWHGAAEX014629/evm.TU.scaffold_60.21


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428203179|ref|YP_007081768.1|0transketolase [Pleurocapsa sp. PCC 7327]
KOGKOG05230Transketolase
nrgi|672186229|ref|XP_008813030.1|0PREDICTED: transketolase, chloroplastic [Phoenix dactylifera]
Swissprottr|Q7SIC9|TKTC_MAIZE0Transketolase, chloroplastic
trEMBLtr|W9RGS5|W9RGS5_9ROSA0Transketolase {ECO:0000313|EMBL:EXB76228.1}
TAIRAT2G452900Transketolase

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000061675054684563-
Transcript Sequence

Network for GWHGAAEX014629

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00456.20Transketolase_N834134.60E-150
PF02779.23Transket_pyr4326026.10E-44
PF02780.19Transketolase_C6277333.20E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00615E2.2.1.1, tktA, tktB Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
Biosynthesis of amino acidsmap01230
Pentose phosphate pathwaymap00030
Carbon fixation in photosynthetic organismsmap00710
Biosynthesis of ansamycinsmap01051

Gene Ontology

GO term OntologyName
GO:0003824Molecular Functioncatalytic activity
GO:0004802Molecular Functiontransketolase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms192.980
SRR2545915Juvenile tuber180.390
SRP108465SRR5643513five period of Gastrodia elata266.660
SRR5643514five period of Gastrodia elata187.600
SRR5643515five period of Gastrodia elata314.060
SRR5643524five period of Gastrodia elata272.570
SRR5643525five period of Gastrodia elata343.170
SRR5643528five period of Gastrodia elata821.630
SRR5643658five period of Gastrodia elata513.710
SRR5643659five period of Gastrodia elata305.470
SRR5643660five period of Gastrodia elata280.830
SRR5643661five period of Gastrodia elata374.890
SRR5643662five period of Gastrodia elata348.330
SRR5643663five period of Gastrodia elata421.130
SRR5643664five period of Gastrodia elata275.450
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1197.740
SRR6049655Rhizomagastrodiae_C368-T10_good_1230.420
SRR6049656Rhizomagastrodiae_C368-T07_good_1197.250
SRR6049657Rhizomagastrodiae_C368-T07_good_1168.450
SRR6049658Rhizomagastrodiae_C368-T04_good_1126.000
SRR6049659Rhizomagastrodiae_C368-T04_good_1128.870
SRR6049660Rhizomagastrodiae_C368-T01_good_1162.310
SRR6049661Rhizomagastrodiae_C368-T04_good_1152.450
SRR6049662Rhizomagastrodiae_C368-T01_good_1299.510
SRR6049663Rhizomagastrodiae_C368-T01_good_1192.140
SRR6049664Rhizomagastrodiae_C368-T10_good_1231.920
SRR6049665Rhizomagastrodiae_C368-T10_good_1231.920
SRP279888GastroGastrodia elata tuber 223.72
JuvenJuvenile tuber152.00
Mother_GastroMother tuber of Gastrodia elata 183.80
Mother_JuvenMother tuber of Juvenile 189.54