Gene detail

Detail information of GWHGAAEX014633/evm.TU.scaffold_60.27_evm.TU.scaffold_60.28

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1267	4.00E-100	Mitochondrial transcription termination factor, mTERF
nr	gi\|695029366\|ref\|XP_009402099.1\|	1.67E-138	PREDICTED: uncharacterized protein LOC103985971, partial [Musa acuminata subsp. malaccensis]
trEMBL	tr\|M0SZQ4\|M0SZQ4_MUSAM	6.00E-134	Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000256\|RuleBase:RU361139}
TAIR	AT5G54180	4.00E-100	plastid transcriptionally active 15

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000061	879799	882918	-

Transcript Sequence
>GWHTAAEX014633 AAGAGTTCATTCAATGGATCTCATCCCGCTGCTCTTTCCCTTCTCTCCCACCGAAACCCTAGTTATAAGGGCACGCGATCACCATGCATTTTCACTGCTGAATACTGCCTTTCTTCATCGATGCCTCGTCCCCTTCGCGCTTACCAATGCTACCACAAATTTCTCCCTCTTCGCAGAACTAAACATGGAGCAAAATGAATTAGAAGCCTTTCTCCACCGTCACCCCGAGATTGAGACTGCTGCCACTATTTCTCCCGAATCTCTTTGTCTCCAAATTAACATCTTGTTATCCATGGGGCTATCTAACATAGCCGTCCGACGGACCATCACCAAACGTCCGAGCATCCTCACATCGCTGGAGACCAGCCTTTTTCTCAACTTCCTTCACAAAGAGGCTGTAAATCTTAATCCGACTAAGCTTGAACGCATTTTAATCAGAACCCATCCTTGTCTCTTTTCAGGAATTTTCATCAGAACAAAACTTCTTCTAAACCTTGGATTTCCCATCGAAAAGCTTGGGCACCTTCTCAGTTTTATTGATATCAAGAAGGCTCTTTCTGATCGAACCATCGAGGAAATTGAGGAAATAGTAGTGTTCTTTCGGCGCTATGGCTGGCCGGATACCATTGTACGCCGTCCCATGCTTCTGAACCTGTGTTTCTACAGCCAGTTGATTCCTCGTGTCCAATTCTTCAATTACCTTGCTAGTGGAGATGAAGAATCCTCTGCAATTCTGATTCGGAAACTTCCTGCACTGCTTTCATATTCTGTCCAGCACCTTCAATCACACCTGGAGTTCTGGAAATCTGTCGGCCTTAATACTGAGCAAGTCTTCAAGATAGCTCTTATTTACCCCAGCATCTTCAGCATCAGCATAGAAAGGAAACTTTGTCCCAGAATTAATTTTCTTGAACAATGCGGATTGGATTCTGAAGACATCTTTAAATTTCTGCTGGGATACAGGTTCCGGACTAAGGAGATGGCTTTGGCTGTTGGTTCCACAACAAGGACGAGCACAGAGAACATGCAGAAAGTAATTGAGCTTTATTTTAGCCATGGCTTCTCTTGCGAGGATGTGTTAGCCATGAGTAGGAAGCATCCACAAGTGCTGCACTATAACTTCGACTCACTGGAAAAGAAGATGGAATTTTTAATTAACAATATGGAAAGGGAGGTGGTGGAACTGCTGAAATTCCCTGCGTTCTTGGGTTATAAGCTGGATGACCGGATTAAGCATAGACATGAGATAAATATGGCGAGCGGTGGGAAGGGGCCGTCATCAATCACCAGTCTTCTTTGTGCTTCTGACAAGAAATTTTACATAAGAGCTAACAAGTGGATAGAAGCTGGATCAGATAGCAATGCCGATCAAGTTTAATTCTGATTATTAATGCCATCTTCTCTGTACAGAAAATGGATATGTAAAAGTTCTTTTTTTTTTGCTTCAATGACACCAGAGTGCATTATTTTGACTAATGGCAATCCCAATCGATAGGAAAATGAGCTGGGTGAAGAGATTGGTGATGGAAATATATCTGTGTATAGCCTCCAAGGATTACATCAATTCTGGGTTGAAAACCATTCATGTCATGTGCCTGGCTGGCATAATTTTTCCAGAAATTCAAGATATAAAACCCCATATAATTGAATAATAATTATACATAAGATGTGAACTTGCAACTGGATAATGTTGTGTTATGGCATAATAGTTGAGGTTTTTGGATTAACACCTTTCAAAAAAAAGCGAACTTGCAAAATTTTTGTAAGGTATGTTAATAAAAGAATGACAATGGCTCTCTTACCTCGCCATTAAGTTGCAGGTCAGCTTGCTCGCAAAATTTTAACTGTAGCATGATGTTTAAATTTATTTACTCTGACTGCATGATTACTTGTTTGAGTAATGCCATGTTGTTTATTGTTGCAATGATCATCTATATGTTACCACCACGTCAAGAATCTTCTGAATCCCTATTTTGAGCTTACTACTAGTTATCCTTTCACTCAGCATAATTTGTAACCGAGTTGGATTGATTGTTAGGACTAGATCAATTTGAGGAGAAGTTTATGGTTATCCGGATTTGTTTGCAAAGCTTCGCAACATGCCTGCTGCAGGGTGTAGCTGTGGTACAATCATGAAAATTCAGGTAAATGAAGTATTTAATTATCATTCTTTGTTTATTATAATTTTTCAGATTATATGAGGTGGCAAACATGGCATTGTTAGAATATTGATTTAATTGCTTTGACCAACGGTGCAAATGCAATGGCAAACAATTTTATTACGAAGTTAAAGATACTTGCATCATATGTAAAATTTGATTTTAAATTGAAAAATGTACTTTTGTATACTTTAAAAACTCAACTCATCTAAAAGCCATGCCTTTATGAGTCCTTGATTAATACTGTGATTGTATTGGTCGGTCCATCCCTCTTTGGTTTTGGTTTGGGAGATGATTGAAGCTTCTTTGGTTTTGATTTGAGAGATAAATGGAAAGTTTTCTTTGGTAAGATGGATTTGGGATAACAGGCCTGAGATTGTTTGTAAAGACATATTAAGGCATTCCCCTTCAAACTTAAAAGTTTTAAGCACTCTCTTTATTTACTCAAAAGAGAAATCTAAGTTTCTCAAGTCGTATATAAGAGAAATTTTCTAAAAAATCTTAATAAACAAATCAGCTGTAAAAATACCAAAAGATATTAAATTGAATGATTTTTGAAAAAGGTGTCCTTATAAATAGTCTTAAAATAATCATATTGTTTCTATAACAGCTATAGTCATTGTAACAAAAAATCTCTTATGTCCGTCTCAACCATCTATTTTCCATGAACTCTCTCGGCTCCTTTCTCTCCTGCAGCATTAGCCCAAAGGAATTCATCTCATAAGCACATATTTATCTTTCAATGATCCGATATTTATAAAATTTTGTGCATGTATTGGCAATTTTCAATCAAGTTTAAATGATGAGATTC

Network for GWHGAAEX014633

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.13	mTERF	52	316	1.10E-17
PF02536.13	mTERF	332	435	2.00E-22

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003690	Molecular Function	double-stranded DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.450
SRP064423	SRR2545915	Juvenile tuber	7.310
SRP108465	SRR5643513	five period of Gastrodia elata	6.780
	SRR5643514	five period of Gastrodia elata	7.730
	SRR5643515	five period of Gastrodia elata	8.150
	SRR5643524	five period of Gastrodia elata	8.710
	SRR5643525	five period of Gastrodia elata	6.180
	SRR5643528	five period of Gastrodia elata	5.080
	SRR5643658	five period of Gastrodia elata	5.780
	SRR5643659	five period of Gastrodia elata	9.000
	SRR5643660	five period of Gastrodia elata	9.920
	SRR5643661	five period of Gastrodia elata	8.240
	SRR5643662	five period of Gastrodia elata	8.370
	SRR5643663	five period of Gastrodia elata	9.650
	SRR5643664	five period of Gastrodia elata	7.140
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.800
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.880
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.260
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.430
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.040
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.930
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.090
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.370
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.300
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.210
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.830
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.830
SRP279888	Gastro	Gastrodia elata tuber	9.56
	Juven	Juvenile tuber	13.05
	Mother_Gastro	Mother tuber of Gastrodia elata	9.56
	Mother_Juven	Mother tuber of Juvenile	10.02