Gene detail

Detail information of GWHGAAEX014634/evm.TU.scaffold_60.29

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|146295635\|ref\|YP_001179406.1\|	3.00E-47	putative TIM-barrel protein, nifR3 family [Caldicellulosiruptor saccharolyticus DSM 8903]
KOG	KOG2333	0	Uncharacterized conserved protein
nr	gi\|695022644\|ref\|XP_009398458.1\|	0	PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q7XT07\|DUS3L_ORYSJ	0	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
trEMBL	tr\|M0SQZ5\|M0SQZ5_MUSAM	0	tRNA-dihydrouridine(47) synthase [NAD(P)(+)] {ECO:0000256\|RuleBase:RU291113}
TAIR	AT4G38890	0	FMN-linked oxidoreductases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000061	924166	974627	+

Transcript Sequence
>GWHTAAEX014634 ATCGAAATAAAATGCAAAACAGTAGCAATACAGATCATATTTATTTTTATTAGTCACAAAATCATAAGACATCATAAAAGAAATACTTAAAAAAAAAAACAGTTTTGTGTATTGGATCATTTGCTTTCATTAGTCTCATTTAGTTTTGGAACTCGAATTTTTCCATGATAAAAAATTATCGATTTTGTTTGTGTAGTTGGGCTCGATGAAGTGCACCGCCCACTTCTAGCACTATTTTCCGCTGTTCCAGTCTCCGTTGCACCTTCCGCCATGTGCGAATATCCCGTTTCCGAGTCAAACGAAGGGAGAGTAGCAGATCAAGACGGCGATGAAAACTCTTCTCACTCGCCGCCCAAATTAGTCGCGGAGGTTCGAACACCGCAGGATCTAGTTGCCAAGGCAATTGCACCGGTGAAGGCTGAATACATAAGGCCACCTCCTTCAAGAACAGCCCTTACAGTCGTGGTTGATGGAAGAGCCCGCGATGGTGCGGCGGAGAGAAAGTCTGCTCCTTCTGGCGTGGTCAATGAGAAGAAGTCCAAGAGGCAGCTTAAGAGGGAGCGGAAGCAGGAGAAAAACTCTGTGGTTAATATTTGTCCTGAGGTTGCCAAAAGTGGCAAGACAGATGGATGCCATTTTGGTGCAAACTGCCGCTTTAATCATGATATGGATGCTTTCTTGGCTCAGAAACCACCAGATCTTGATGGGTTTTGTCCTTTTGTTACTAATGGAGAGTTGTGCCCGTATGGAGTGGCTTGTAGATTCTTATGTACACACAAGGAATCCACTGAAGCAAATTTGGATATTCCTAAGCAGACCTCTGAGATTAATGTTCTGAAGAAAGATTTGCAACGGCTTTTGTGGAAAAATAAACTTTCGTTTCCCAAGGCTGATTTTCAACTCAAGGCCTTAGGGCTGAAGGCAGACAAAAACTCGGTGGAAAAGGCAGGAATTCGTCAGTTGGATGACAATCAAGAAATTTCCAATGTTTCAAATGGTCTTCGAACTGATGTAGGTGTTTCTATCTTATGCAGTTCTTCTAATGAATTACAATGCTCTCCAGGGAAGGCTATAGAGAAGGAGCGTTCAAGGGATGCTTTTATTTTTGACGAATCTAGCCCTTTAAAGAAGGTAAAATGTCTTCTTGTTGAAGAGCATTGCTCCTTGGAATCCATTGATGTGGATACAGTTGAAAAGAAAAATGATATTCAACACACTAGTTTACATAATGGAAGTGAAGATCCCTCAAGCATTAGAATGCATTCTTCTAAAGCTGATTTGAATTTAAAGCCACATGCAAAAGAGAAAAAATTTATTGATTTTAGAGGGAAGTTATACCTGGCACCTCTTACAACTGTTGGCAACCTTCCATTCAGAAGGATCTGCAAAACTTTCGGGGCTGATATAACTTGCGGTGAAATGGCTGTCTGCACTAATCTCCTGCAGGGACAAGCTTCTGAATGGGCATTACTAAGGAGACACTCATTAGAGGGCATTTTTGGGGTGCAAATTTGTGGAGCTTATCCAGACACTATATCTCGCACTGTTGAGCTTATTGATCAACAATGCGAAGTTGACTTTATTGACATCAATATGGGGTGCCCAATTGATGCCATTGTTAATAAAGGTGCAGGTTCTTCTCTTCTTATGAAACCCATGAGGATGAAGAGCATTATTCAAGCAGCCAGTGGAACAACTAGGTTGCCATTAACCATCAAGGTTCGAACCGGGTTTTTTGAAGGAAGAAATCGAGTAGATTCATTTATTTCAGATATTTATGAATGGGGAGCGAGTGCAATAACTGTACATGGTCGCTCAAGACAACAACGATATAGCAAGCTTGCTGACTGGAACTATATATATCAGTGCACAAAAAAAACTACTACTGATCTCCAAGTGCTTGGAAATGGTGATATATTTTCATATTGTGACTTCAATAAACATGTTTCTGACTGCTCGGAACTATCCACTTGCATGATTGCTCGCGGTGCTTTAATCAAGCCGTGGATATTTACTGAAATAAAGGAACAAAGACACTGGGATATCAGTTCAGGGGAGCGGTTAAATATTCTTAGAAGTTTCGTGAATTTTGGTCTTGAGCATTGGGGCTGTGATACCAAAGGTGTGGAAACAACCAGATATTTTCTGCTGGAGTGGCTAAGTTACACCCATAGGTATATTCCAGTAGGGCTTTTAGATATTGTCCCTCAGCGCCTTAACTGGAGGCCACCAAGCTACTTTGGTAGGGATGACCTCGAGACCCTAATGGCCTCTGACTCTGCTGCCGACTGGGTCAGGATATCCGAAATGCTGCTGGGAAAGGTTCCAGACAGCTTTACCTTTGCCCCAAAGCACAAGTCTAATGCTTATGACAGTGCTGAGAACGGCTGATTTTTCTGGAATTCAAACTTTATGCACGGCTTAGAGGTCTGTTTTTCTTAAGCATCGTCACTTTAACAGGCAGCAAGTCTGGCACTTAGTTTTTTCTTTTGGGTTGCTGTGACCCAATCAATAGCTGTTTGCATTGATGCTTCGAAATTGCTCGACAAGTTGATGATGGGTGGACACTACATGTATTTGTTAGCCTAAGTTAATCAGCAAATTTTTTTTTTTTAATGTTTTAGTTGCTGCAAAGGTTACATACATATATATATATATAT

Network for GWHGAAEX014634

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01207.16	Dus	357	592	2.70E-49

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008033	Biological Process	tRNA processing
GO:0055114	Biological Process	oxidation-reduction process
GO:0046872	Molecular Function	metal ion binding
GO:0050660	Molecular Function	flavin adenine dinucleotide binding
GO:0017150	Molecular Function	tRNA dihydrouridine synthase activity
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	92.750
SRP064423	SRR2545915	Juvenile tuber	90.580
SRP108465	SRR5643513	five period of Gastrodia elata	43.430
	SRR5643514	five period of Gastrodia elata	40.470
	SRR5643515	five period of Gastrodia elata	39.430
	SRR5643524	five period of Gastrodia elata	37.820
	SRR5643525	five period of Gastrodia elata	28.100
	SRR5643528	five period of Gastrodia elata	27.590
	SRR5643658	five period of Gastrodia elata	31.830
	SRR5643659	five period of Gastrodia elata	46.590
	SRR5643660	five period of Gastrodia elata	45.480
	SRR5643661	five period of Gastrodia elata	43.510
	SRR5643662	five period of Gastrodia elata	38.250
	SRR5643663	five period of Gastrodia elata	44.760
	SRR5643664	five period of Gastrodia elata	39.250
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	54.200
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	42.810
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	48.590
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	65.690
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	62.670
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	70.140
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	61.230
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	59.220
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	40.350
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	47.530
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	42.520
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	42.520
SRP279888	Gastro	Gastrodia elata tuber	52.32
	Juven	Juvenile tuber	80.73
	Mother_Gastro	Mother tuber of Gastrodia elata	39.13
	Mother_Juven	Mother tuber of Juvenile	65.28