Gene detail

Detail information of GWHGAAEX014637/evm.TU.scaffold_60.32

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|428310439\|ref\|YP_007121416.1\|	2.00E-146	glycogen debranching protein [Microcoleus sp. PCC 7113]
nr	gi\|449454175\|ref\|XP_004144831.1\|	0	PREDICTED: uncharacterized protein LOC101204549 [Cucumis sativus]
Swissprot	tr\|Q9SW48\|INVB_ARATH	0	Probable alkaline/neutral invertase B {ECO:0000305}
trEMBL	tr\|A0A0A0K5W2\|A0A0A0K5W2_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN43226.1}
TAIR	AT4G34860	0	Plant neutral invertase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000061	1025131	1050283	-

Transcript Sequence
>GWHTAAEX014637 ATGAGATCAATGGGCACAACTAAGGATGAAAATGGCACGATTAGTGATCCCCCTCCCATGGATGTCGATGAATATGATTATTTGGAGAAGCGCGGCAGGTCAGGACCATCCAATCTTGGTCGTCATAGGTCTGATGTTGTTAAAGCCATCCATACGCTTTCTATTGCTGATCCAACTCTTCTTCATTCTATAACAAACTTGGAAAAGATAGCTGACCAAGAAGGCAACTCTCCTAATTTTGCAACTCCAATTTCTTTCAATCCCTTTGAGTCCAGCACTATAATGTCAAAAGCTTATGAGGCTCTAAAAATGTCGATTGTGTACTTCCAAGGAGAAGCTGTAGGGACAATTGCTGCACTGGATCATACAGAAGAAACGCTCAACTATAATCAGGCATCTTATTCTATTCCCCTTTTATTCATAAAGATGCCTATATGTGCTAAATTTATGATAGTGTTTGTGAGAGACTTCTTTCCATGTGCTTTGGCATTTCTTATGAAGGGTGAGTCAAAAATTGTAAAAAATTTCCTCCTCAAAACTATTCTCATCCAATCACGGGAGAAAACAATTGATCTCTTTAAGTTAGGGGAAGGAGTGATGCCTGCAAGCTTTAAAGTTCTTAATGATCAAATTTCTCACAAGGAAACTCTAACGGCTGATTTTGGGGGTAACGCCATTGGAAGAGTAGCTCCAGTAGATTCTGGATTTTGGTGGATTATATTGCTTCGTGCATACACTAGATCTACAGGAGACACATCCTTAGCTGAAAGGACCGAGTGCCAAAAGGGCATGAGACTTATATTGAATCTGTGCCTCTCAGAAGGCTTTGACACTTTTCCTACTTTGCTTTGTGATGATGGCTGCTGTATGATTGATCGCAGAATGGGCATATATGGCTATCCTATTGAAATACAAGCTCTGTTTTTCATGGCATTAAGATGTTCGCTAGTTTTACTAAAGCATGATGACGAAGGCAAGGACTTTGCTGAACGGATTTCTAAGAGGCTACATGCACTTAGCTATCACATGAGGAGCTATTTCTGGCTTGATTTCCATCAGCTGAATGATATATATAGATACAAAACAGAAGAGTATTCTCACACAGCAGTTAACAAATTTAATGTAATGCCTGACTCTATTCCCAATTGGATTTTTGATTTCATGCCAACTCGTGGTGGTTACTTCATTGGTAATGTCAGCCCAGCTAGAATGGACTTTCGCTGGTTTAGTCTGGGAAACTTTATAGCAATCTTGTCATCTTTGTCAACAACTGAACAGGCTGAAGCCATAATGGATCTTTTGGAAGAACGATGGATTGATTTAGTTGGAGAAATGCCATTGAAGGTTTGCTATCCTGCGCTTGAGCATCATGAGTGGCAAACAGTAACTGGTTGTGATCCTAAAAACACAAGGTGGAGCTATCACAATGGCGGATCGTGGCCTGAATTGGTAATTGCTGCCACGACTGCTATGCGGAATAGATGCGGACAAAGGAGATCTCTTCTTTTTTTTCCTTGTTCAAATAGGATCACTTCCCCTTTTCCCATTCAAAGGGGATCTCTCTTCTTCTTCTCCATTCAGAGGGGATTTCTGTCGTTGGCGGTTGGTGACGAAGGAGAGAAGGACGAAGAGGCAAGGAAGAGGAGAAGATGTCCTGTTGCCAAGGACGGGATGCGGAGGTCGAGGGCAGCGACTGGCGGCCGAAGAGGTGGCTGCCGGAGGTGGGAGGATGAGATGTTTGAGTGGAGGAAGAGGGAGGTTTGA

Network for GWHGAAEX014637

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12899.6	Glyco_hydro_100	149	491	5.70E-164

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0033926	Molecular Function	glycopeptide alpha-N-acetylgalactosaminidase activity
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.880
SRP064423	SRR2545915	Juvenile tuber	1.240
SRP108465	SRR5643513	five period of Gastrodia elata	0.820
	SRR5643514	five period of Gastrodia elata	1.080
	SRR5643515	five period of Gastrodia elata	0.380
	SRR5643524	five period of Gastrodia elata	0.640
	SRR5643525	five period of Gastrodia elata	1.750
	SRR5643528	five period of Gastrodia elata	0.960
	SRR5643658	five period of Gastrodia elata	1.550
	SRR5643659	five period of Gastrodia elata	0.970
	SRR5643660	five period of Gastrodia elata	0.200
	SRR5643661	five period of Gastrodia elata	0.990
	SRR5643662	five period of Gastrodia elata	0.650
	SRR5643663	five period of Gastrodia elata	0.430
	SRR5643664	five period of Gastrodia elata	0.410
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.580
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.670
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.420
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.670
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.080
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.220
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.460
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.160
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.580
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.060
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.600
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.600
SRP279888	Gastro	Gastrodia elata tuber	0.15
	Juven	Juvenile tuber	1.07
	Mother_Gastro	Mother tuber of Gastrodia elata	0.35
	Mother_Juven	Mother tuber of Juvenile	0.90