Gene detail

Detail information of GWHGAAEX014645/evm.TU.scaffold_60.44

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|311108868\|ref\|YP_003981721.1\|	3.00E-33	phospholipase D [Achromobacter xylosoxidans A8]
KOG	KOG1329	0	Phospholipase D1
nr	gi\|743828618\|ref\|XP_010933911.1\|	0	PREDICTED: phospholipase D gamma 1-like [Elaeis guineensis]
Swissprot	tr\|P93733\|PLDB1_ARATH	0	Phospholipase D beta 1
trEMBL	tr\|D7LI11\|D7LI11_ARALL	0	Phospholipase D beta 1 {ECO:0000313\|EMBL:EFH58076.1}
TAIR	AT2G42010	0	phospholipase D beta 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000061	1379389	1427358	-

Transcript Sequence
>GWHTAAEX014645 AGCAACGAATTTTCAGGTACAGCCGGCCAGTCGCGGTCGTATGGACTTCCCGGCCACCCAGATTCACCTTCTCCGCTCCCAGCAACTTTTTCAATTTGCACTACGATCCACAGAAAAACAGAACGTCAATCTTCCAAAAAAAATAGTAGTTTTTAACGTTCATGGACGGCTACTACGGCAACCCTTATCCTTATGCCTACGGGCATTCTCCTCCTCCTCCTCCAAATTACGATCCTTACGGATCGCCTGCTCCGGCGCCGCGCTACATTCTCCCGTCCAACTCCTTTCATTCTCCGCCCGTTCAGCAATTCGTCGACTACCCCACGCAGCTGCCCTTCCACTCTTCCGCTCCTCTTCAGCCCCATCCATACGATCCTTGTTACTACGATCCCCTCCCCAATCCCTCTTACCCTTACCCTCCCTACAATCCCAGCATCGACCCCCTTCGCCCTAATCCCAATCCCCCGGTCTTCCACCATTCCAGCAGCATCTCCTCTCATTATCCCCCGGTCGATCATCCTTCCCCACTTCCCGCAGCCGCCCGCCCAACCCACGCGCCCTCGCTCTCTTCGTCATCCCTTTATCCAGTCGACGATGTCCTTGCAGACGCCCGCCTTTCGGATCCTGTTTCCCTTCAAACGTCCCAGTCCTTCTCTACCAACGCGAAGGCTGATTCGCAGCGCTGGCAGATCGTCCCGGCCGGCGTCCAGGCCCTGCAGCCCTCCCTCAAGGTTCTCCTCTTGCACGGAAGCCTTGACATTTGGGTCTTGGAGGCGCGATGCCTTCCCAACATGGACATGTTCTCGAAAACCCTAAGCGACATGCTTGGCCGCCGGCTCTCGGGCTCCCTCAGCAGCAAGATAGAGCATGTGTCTTCCATCACCAGCGACCCGTATGTCTCCATCACCGTCGCCGGAGCCGTCGTGGGCAGAACTTACGTAGTCAGCAACAGCGAGTTCCCGATCTGGACGCAGCATTTCTATGTGCCCGTGGCGCATCATGCGGCCGACGTCGTGTTCCTTGTCAAAGACAATGATGTCGTCGGCTCGCAGCTCATCGGCTCCGTCTCCATTCCGGCTGAGTGGATTTACTCCGGCGAGAAGGTGGAGGGAATCTACCCGATTCTGGGTTCCAACGGAAAGCCTTGCAAGCCTGGTGCAACCCTCAAGCTGTCAATTCAGTATATCCCAATAGAGAAGCATGGAATGTATTGCCAAGGAGTTGGCGCGGGTCCTGACGATGGCGGTGTTCCCGGCACTTATTTTCCTCTAAGAAAGGGAGGAAGGGTTACTCTGTATCAGGACGCTCATGTACCTGACGGCTTCCTGCCTGACCTGAAGCTGGACAGGGGAGCACACTATGATCACGGAAAGTGCTGGTGGGACATTTTTCAGGCAATAAGTCAGGCTCAGCGTTTGATTTATATTACTGGGTGGTCTGTGTTCCACACAGTTAAGCTGGTGCGGGATGCGGGCTTTGAGTTTGATTGTACGTTGGGCGATCTTCTGAAATCTAAGTCACAGGAAGGAGTGAGGGTGCTGCTTCTTGTGTGGGATGATCCGACTTCAAGGAGCATTCTTGGCTATCAGATTGATGGTGTTATGGCTACCCATGATGAGGAGACTCGCCGATTTTTTAAGCATTCTTCAGTGCAGGTTCTTCTTTGCCCTCGGTCTGCTGGGAAGAAGCACAGCTGGGTGAAGCAGCAGGAAACTGGAGTCATATTTACACATCACCAGAAGACTGTTATTGTTGATGCTGCTGCTACGGGCAACAAGAGAAAACTCATTGCTTTTGTTGGAGGGCTTGATTTGTGTGGAGGCAGATATGATAATCCCAAGCATCCTTTGTTCAGCACGCTTCAAACCTTGCATAAGGATGACTATCATAATCCTAACTTCACGGGGGCTGAATCAAAAGGACCAAGAGAAGCTTGGCATGATTTGCATTCTAGAATTGAAGGACCTGCTGCTTATGATGTCCTAACAAATTTTGAGGAACGTTGGTTAAAAGCAGCTAAACGTCGTGGGCTCAAAAAACTAAAGAAATCATATGATGATGCATTGCTTAAGTTAGAAAAGATAAAAGACATCATGGGACTGAATGATTCACTTTACCTGAATGATAATGATCCTGAGAGTTGGCATGTGCAGATTTTCCGTTCTATTGATTCTAATTCTGTGAAAGGATTCCCGAAAGATCCGAAAATTGCTACTAGTAAGAACCTTGTTTGTGGAAAGAATATGCTGATTGACATGAGTATACACACAGCATATGTTAAGGCCATCCGAGCTGCTCAACATTTTATCTATATTGAAAACCAATACTTCCTCGGTTCATCTTATAATTGGGATTCTAACAAAGATTTAGGTGCCAATAATTTGATACCCATGGAGATTGCACTGAAAATTGCTTACAAAATTAAAGCCCATGAAAGATTTTCCGCATACATAGTTATTCCAATGTGGCCAGAGGGGAATCCTACAGGTGCTGCCACACAACGTATTCTTTATTGGCAGAAAAAAACTATGCAGATGATGTATGAGACTATTTATAGGGCTCTAAGGGAAGTTGGGCTTGAAGATACTTATGAACCACAAGATTATTTGAACTTTTTCTGCCTTGGCAACCGTGAGGCTGCTGTGAATAGCTCACAAAACGGAAGCCCAACTTCAGCTAACACTCCTAGCGCGCTTGCCAAGAAGAATAGGCGCTTTATGATTTACGTGCACTCCAAAGGCTTGATCGTTGATGACGAGTACGTGATTGTTGGATCAGCAAACATTAATCAGAGGTCCCTTGAAGGCACCAGAGATACCGAAATTGCGATGGGTGCTTATCAGCCCCAGCATACGTGGGCGAGAAAGGCTTCAGGACCTACTGGTCAAATTTATGGATATAGGATGTCTTTATGGGCGGAGCATACGGGAACTCTGGAGGAGTGCTTTTCCAGACCAGAGAGCCTTGAATGCATGAGGCGCATTCGTGCACTCGGCCAGATGAACTGGGGACAGTTCGTGTCTGAGGAGGTCACAGAAATGAAGGGCCATCTTCTGAAGTATCCTGTACATGTTGACAGAAAGGGAAGGGTCAAACCCCTTCCTGGATGTGAAACCTTCCCTGATCTCGGAGGAAACATTTGCGGCTCCTTCCTCGCAATTCAAGAAAATCTTACAATTTGAAGCTAGATTGTGGCCATGTAATTTATACATGCATATCTCTCTCTATATATATATATATAGAGACAGTAAGGAAAATGTATAAAAAAGAGCACTTATCATTGCACATCTCTTGCAATCCATAAAAAAAAAAATTAATGGACTAAAAAGCCGATAGATAAAAATGTTGTGATTTTTTGACCAATAGTTTCCTTAAATTTGATTCGTTGTAATTTTTTATGGGTGGTAAAATATATGCAAAGAGAAGTGATTCTAGTACACACACTACTGTATAATGCTACTATCATTTAGGCGTGAAATTAATTTCAGACTCTTGGTATCTACTCACTTGGATAGGGTATATGTGAAGTTAAAACTGATGTAAATACATATTCTAGTATTACTATATATGTGAAGTTAAAAATGATGTAAATACATTATTCTAGTATACTATATATAAAATGTTGTAAATGAATTGTCTCATTTTTTC

Network for GWHGAAEX014645

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00168.29	C2	196	321	5.50E-23
PF00614.21	PLDc	521	555	1.20E-09
PF00614.21	PLDc	853	879	2.30E-07
PF12357.7	PLD_C	926	996	2.70E-29

Protein Sequence

>GWHPAAEX014645
MDGYYGNPYPYAYGHSPPPPPNYDPYGSPAPAPRYILPSNSFHSPPVQQFVDYPTQLPFHSSAPLQPHPYDPCYYDPLPNPSYPYPPYNPSIDPLRPNPNPPVFHHSSSISSHYPPVDHPSPLPAAARPTHAPSLSSSSLYPVDDVLADARLSDPVSLQTSQSFSTNAKADSQRWQIVPAGVQALQPSLKVLLLHGSLDIWVLEARCLPNMDMFSKTLSDMLGRRLSGSLSSKIEHVSSITSDPYVSITVAGAVVGRTYVVSNSEFPIWTQHFYVPVAHHAADVVFLVKDNDVVGSQLIGSVSIPAEWIYSGEKVEGIYPILGSNGKPCKPGATLKLSIQYIPIEKHGMYCQGVGAGPDDGGVPGTYFPLRKGGRVTLYQDAHVPDGFLPDLKLDRGAHYDHGKCWWDIFQAISQAQRLIYITGWSVFHTVKLVRDAGFEFDCTLGDLLKSKSQEGVRVLLLVWDDPTSRSILGYQIDGVMATHDEETRRFFKHSSVQVLLCPRSAGKKHSWVKQQETGVIFTHHQKTVIVDAAATGNKRKLIAFVGGLDLCGGRYDNPKHPLFSTLQTLHKDDYHNPNFTGAESKGPREAWHDLHSRIEGPAAYDVLTNFEERWLKAAKRRGLKKLKKSYDDALLKLEKIKDIMGLNDSLYLNDNDPESWHVQIFRSIDSNSVKGFPKDPKIATSKNLVCGKNMLIDMSIHTAYVKAIRAAQHFIYIENQYFLGSSYNWDSNKDLGANNLIPMEIALKIAYKIKAHERFSAYIVIPMWPEGNPTGAATQRILYWQKKTMQMMYETIYRALREVGLEDTYEPQDYLNFFCLGNREAAVNSSQNGSPTSANTPSALAKKNRRFMIYVHSKGLIVDDEYVIVGSANINQRSLEGTRDTEIAMGAYQPQHTWARKASGPTGQIYGYRMSLWAEHTGTLEECFSRPESLECMRRIRALGQMNWGQFVSEEVTEMKGHLLKYPVHVDRKGRVKPLPGCETFPDLGGNICGSFLAIQENLTI

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01115	PLD1_2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564
		Ether lipid metabolism	map00565
		Ras signaling pathway	map04014
		Phospholipase D signaling pathway	map04072
		Sphingolipid signaling pathway	map04071
		cAMP signaling pathway	map04024
		Endocytosis	map04144
		Fc gamma R-mediated phagocytosis	map04666
		GnRH signaling pathway	map04912
		Thyroid hormone signaling pathway	map04919
		Glutamatergic synapse	map04724

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	13.150
SRP064423	SRR2545915	Juvenile tuber	12.570
SRP108465	SRR5643513	five period of Gastrodia elata	18.150
	SRR5643514	five period of Gastrodia elata	20.080
	SRR5643515	five period of Gastrodia elata	20.230
	SRR5643524	five period of Gastrodia elata	20.840
	SRR5643525	five period of Gastrodia elata	26.830
	SRR5643528	five period of Gastrodia elata	27.040
	SRR5643658	five period of Gastrodia elata	30.560
	SRR5643659	five period of Gastrodia elata	17.990
	SRR5643660	five period of Gastrodia elata	17.070
	SRR5643661	five period of Gastrodia elata	17.530
	SRR5643662	five period of Gastrodia elata	18.000
	SRR5643663	five period of Gastrodia elata	17.110
	SRR5643664	five period of Gastrodia elata	18.350
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	21.320
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	19.840
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	19.590
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	19.700
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	20.240
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	25.300
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	19.800
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	20.820
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	20.610
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	21.320
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	20.180
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	20.180
SRP279888	Gastro	Gastrodia elata tuber	22.40
	Juven	Juvenile tuber	37.28
	Mother_Gastro	Mother tuber of Gastrodia elata	41.93
	Mother_Juven	Mother tuber of Juvenile	54.30