Detail information of GWHGAAEX014647/evm.TU.scaffold_60.46
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 7.00E-124 | FOG: PPR repeat |
| nr | gi|672183221|ref|XP_008811881.1| | 9.35E-168 | PREDICTED: pentatricopeptide repeat-containing protein At1g05600 [Phoenix dactylifera] |
| Swissprot | tr|Q9SYK1|PPR11_ARATH | 2.00E-124 | Pentatricopeptide repeat-containing protein At1g05600 |
| trEMBL | tr|F6I2Y0|F6I2Y0_VITVI | 8.00E-146 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB61297.1} |
| TAIR | AT1G05600 | 7.00E-124 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000061 | 1440162 | 1441959 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014647
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12854.6 | PPR_1 | 183 | 214 | 3.20E-06 |
| PF12854.6 | PPR_1 | 221 | 250 | 1.50E-05 |
| PF13812.5 | PPR_3 | 318 | 380 | 6.30E-05 |
| PF01535.19 | PPR | 406 | 434 | 0.0031 |
| PF01535.19 | PPR | 441 | 469 | 0.042 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.710 |
| SRR2545915 | Juvenile tuber | 2.670 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.040 |
| SRR5643514 | five period of Gastrodia elata | 2.950 | |
| SRR5643515 | five period of Gastrodia elata | 2.650 | |
| SRR5643524 | five period of Gastrodia elata | 2.400 | |
| SRR5643525 | five period of Gastrodia elata | 1.710 | |
| SRR5643528 | five period of Gastrodia elata | 1.700 | |
| SRR5643658 | five period of Gastrodia elata | 1.420 | |
| SRR5643659 | five period of Gastrodia elata | 5.060 | |
| SRR5643660 | five period of Gastrodia elata | 3.280 | |
| SRR5643661 | five period of Gastrodia elata | 3.750 | |
| SRR5643662 | five period of Gastrodia elata | 4.620 | |
| SRR5643663 | five period of Gastrodia elata | 4.670 | |
| SRR5643664 | five period of Gastrodia elata | 4.960 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.350 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.800 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.360 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.200 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.440 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.510 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.470 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.850 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.290 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.420 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.420 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.73 |
| Juven | Juvenile tuber | 8.11 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.67 | |
| Mother_Juven | Mother tuber of Juvenile | 4.21 |