Detail information of GWHGAAEX014652/evm.TU.scaffold_60.52


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|262193487|ref|YP_003264696.1|2.00E-24MATE efflux family protein [Haliangium ochraceum DSM 14365]
KOGKOG13472.00E-154Uncharacterized membrane protein, predicted efflux pump
nrgi|672182369|ref|XP_008811430.1|0PREDICTED: MATE efflux family protein 5 [Phoenix dactylifera]
Swissprottr|Q9SIA5|DTX1_ARATH2.00E-65MATE efflux family protein DTX1
trEMBLtr|A2XPA9|A2XPA9_ORYSI3.00E-177MATE efflux family protein {ECO:0000256|RuleBase:RU004914}
TAIRAT4G227902.00E-154MATE efflux family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006116849301686648+
Transcript Sequence

Network for GWHGAAEX014652

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01554.17MatE231822.00E-31
PF01554.17MatE2424048.20E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055085Biological Processtransmembrane transport
GO:0015297Molecular Functionantiporter activity
GO:0042910Molecular Functionxenobiotic transporter activity
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.450
SRR2545915Juvenile tuber0.050
SRP108465SRR5643513five period of Gastrodia elata4.260
SRR5643514five period of Gastrodia elata3.910
SRR5643515five period of Gastrodia elata3.930
SRR5643524five period of Gastrodia elata5.160
SRR5643525five period of Gastrodia elata19.780
SRR5643528five period of Gastrodia elata30.770
SRR5643658five period of Gastrodia elata16.200
SRR5643659five period of Gastrodia elata0.080
SRR5643660five period of Gastrodia elata0.250
SRR5643661five period of Gastrodia elata0.080
SRR5643662five period of Gastrodia elata0.670
SRR5643663five period of Gastrodia elata0.640
SRR5643664five period of Gastrodia elata0.770
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_12.400
SRR6049655Rhizomagastrodiae_C368-T10_good_14.240
SRR6049656Rhizomagastrodiae_C368-T07_good_13.210
SRR6049657Rhizomagastrodiae_C368-T07_good_12.450
SRR6049658Rhizomagastrodiae_C368-T04_good_14.250
SRR6049659Rhizomagastrodiae_C368-T04_good_17.500
SRR6049660Rhizomagastrodiae_C368-T01_good_14.380
SRR6049661Rhizomagastrodiae_C368-T04_good_14.510
SRR6049662Rhizomagastrodiae_C368-T01_good_115.120
SRR6049663Rhizomagastrodiae_C368-T01_good_18.890
SRR6049664Rhizomagastrodiae_C368-T10_good_14.900
SRR6049665Rhizomagastrodiae_C368-T10_good_14.900
SRP279888GastroGastrodia elata tuber 1.94
JuvenJuvenile tuber0.45
Mother_GastroMother tuber of Gastrodia elata 92.55
Mother_JuvenMother tuber of Juvenile 8.43